Solanum lycopersicum mRNA Solyc08g077420.2.1

mRNA details  
Name Type Length
4,473
Organism
Description
ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain
Location(s)
SL2.50ch08:61276784..61289874
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0005737
Length
13091
Nb exon
29
Sifter term
GO:0004004
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc08g077420.2.1 ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain

CGATCTCCCTCAACCTCCATACACTGTTAATTCCTTAACTGTCTCCAACAAATCTCAAACAAAAACACAATTTGTTTTCTTCTTCTTACGCGCATTCAAATTCCTAAACCCTAACCCTAACGCTGACGCTGAATTCGTATGTGATTAACGAGTGCTGTCTGTCATCACCAAAAAAATGGATTCTCAGGGGAATAGTTTGTACGACACAGCGTCGCAGCCGGACACGGGTAACGATGTGTACACATTTTTGGAATTCAACACACAGGGAGAAGAATTCGATTATCCTGAGTTTCATGAGCTTTCACAGCCAATTAGATCATCTGCTTGGCCTACACCGTCTGATTCCTTAGTCTCTGAAGTTCCTGATCGTCCGCAGTCGTCGTCTGATGCTTCTCAAGCGTCAGGTAAATCACGTGGCGGTGACGGTGGACGGAGTAGGAGTAGTAGTAGCAGTAAGATTAGTAGTAATAAGGCGGCAGCGGTGGCGGTGGATGCATTGGCGGCAGGGATGAGCGGGTTGAATTTTGAAGAGACTGGTGATGATGAGAATTTTGAGTATGGAAAAGGAGATTTTGCGGTTGAACATGCTTGTAAGTACTGTGGAGTGACGAATCCTGCTTGTGTGGTTAGGTGTAACGTCCCATCCTGCCGCAAATGGTTCTGTAATTCGAGAGGGAATACTTCGGGTTCTCATATTGTTAATCACTTGGTCCGAGCGAAACACAAGGAGGTTTGTCTTCATAAAGATAGTCCATTGGGAGAAACAATTCTAGAGTGCTACAACTGTGGATGTCGAAACGTCTTTCTTCTTGGCTTCATCTCTGCCAAGACCGAGAGTGTCGTTGTTCTCCTCTGCAGGGAACCATGTTTGAATGTTAATGCGCTGAAGGATATGAATTGGGATTTGAGTCAGTGGTGCCCCCTAATCGATGATAGGTGTTTCTTGCAATGGCTGGTTAAGGTTCCATCAGAGCAAGAACAGTTGCGGGCACGGCAAATCAGTGCTCAACAAATAAATAAAATTGAAGAATTGTGGAAGACAAATCCTGATGCTAATTTGGAAGATCTTGAGAAGCCAGGTGTGGATGATGAACCTCAGCCTGTTGGCTTGAAGTATGAAGATGCCTATCAGTATCAAAACATATTTGCACCGCTGATCAAGCTTGAAGCTGACTATGATAAGATGATGAAAGAGTCTCAAAGTAAAGATAACCTCACTGTTCGGTGGGATATTGGTCTCAACAAGAAGCGGGTAGCATATTTTGTTTTCCCGAAGGAAGACAATGAGTTACGACTTGTACCTGGTGATGAGCTACGACTGCGTTATTCAGGGGATGCAGCTCATCCAGCATGGCAGTCAGTGGGGCATGTGATAAAATTAACTGCTCAAGAAGAGGTTGCCCTTGAGCTTCGTGCCAGTCAGGGAGTTCCGGTTGATGTGACCCATGGGCTGAGTGTTGACTTTGTTTGGAAGAGTACGAGCTTTGACAGAATGCAAACTGCAATGAAAACTTTTGCTGTGGATGAGACAAGTGTTAGTGGGTATATTTACCATCATCTGCTAGGTCACGAAGTTGAGATGCAGATGATTCGGAATGCACTTCCTCGCCGTTTTGGTGCTCCTGGTCTTCCAGAGCTTAACGCGTCTCAGGTTTTTGCTGTAAAAAGTGTTCTCCAGAAGCCCGTCAGTTTAATTCAAGGTCCGCCCGGTACGGGAAAAACTGTTACCTCCGCTGCCATCGTGTATCATATGGCCAAGCAAGGCCAGGGTCAGGTTTTGGTCTGTGCACCCAGTAACGTGGCTGTGGACCAATTAGCAGAGAAAATAAGTGCTACTGGACTGAAGGTTGTCAGGCTCTGTGCTAAGTCGAGAGAAGCTGTCAGTTCTCCAGTTGAGCATTTAACCCTTCACTATCAGGTTCGTCATCTTGACACATCCGAGAAGAGTGAACTTCACAAGTTACAGCAACTGAAGGATGAACAAGGAGAACTCTCCAGCGGTGATGAGAAGAAATATAAAGCTCTGAAACGGGCTACAGAGAGGGAGATAGCTCAAAGTGCTGATGTGATTTGTTGCACCTGTGTTGGTGCTGGAGATCCTAGATTGGCAAATTTTAGATTCCGTCAGGTGCTCATTGATGAGTCCACTCAAGCAGCTGAACCTGAATGCCTTATTCCTTTGGTTCTTGGAGCAAAGCAGATTGTCCTTGTTGGTGATCACTGCCAGCTTGGACCTGTCATTATGTGCAAGAAAGCTGCACGGGCTGGGCTTGCTCAATCCCTGTTTGAACGTCTTGTACTGCTGGGTGTGAAGCCAATCAGGCTGCAGGTACAATACCGTATGCATCCTGCACTGTCAGAGTTCCCGTCAAATAGCTTTTACGAAGGTACACTTCAAAACGGTGTAACCATCAACGAGAGACAATCATTAGGCATTGATTTTCCTTGGCCTGTGCCAAACCGTCCCATGTTCTTTTATGTCCAGATGGGACAAGAAGAGATCAGTGCTAGTGGAACTTCCTATCTAAATAGAACTGAAGCTGCTAACGTTGAGAAGCTAGTGACTACGTTCCTCAAAAGTGGTGTAGTCCCTAGTCAGATTGGAGTTATAACACCATATGAGGGTCAACGAGCATATATTGTAAATTATATGTCTAGAAATGGTGCTTTAAGGCAGCAACTTTACAAGGAAATTGAGGTTGCAAGTGTAGATTCATTTCAAGGAAGAGAAAAAGATTATATCATCTTGTCTTGTGTCAGGAGCAATGAACATCAGGGCATTGGGTTTCTGAATGATCCTCGCAGGCTTAATGTTGCTCTTACACGTGCTCGTTATGGAATCGTTATCCTAGGAAATCCTAAAGTGTTGAGCAAGCAGCCTCTCTGGAATGGGTTGCTGACACACTACAAGGAGCATGAATGCTTGGTAGAAGGTCCTTTAAATAACTTAAAGCAAAGTATGGTACAGTTTCAGAAGCCAAAAAAGATCTACAATGACCGCAGGCTTTTCTTTGGTGGTGGACCTGGAATTGTTCCCAGTGATAATTATGGATCTCCTGCCTCATCAAACCCCAATGCTGACAGGCGAAGTAGTCGCTCTAGGGGTTCTTACATGGCACCTCGTCCATCCAATGGTACTCACAGACCTGGTGTCTATCCTTCTGGTTATCCAATGCCTCGAGTTCCCATCTCCCCTTACCATGGCGGCCTTCCCCAACCGTATGCAATTCCTGCTCGTGGTGCTATACAGGGACCTGTTGGAGCTGTACCTCATGTTCCACAGCTAGGTAGCCGGGGTTTTGGTGCCGGGCGTGGGAATGCCAATGCTCCAATTGGTAGCCATCTTTCTCACCAGCAAGCCTCCCAGCAACCTATTGGAAGTCATGGACCTAACTTCAACTTTTCTGCACTTGAAAATCCAAACAGTCAACCATCCGGAGGACCTTTATCTCAGCCTGGATATGCTTCTAATATGGCCGTTCAAGGACCAAGCCAGACATTTCGCGATGGATTTTCAATGGGCGGCATGTCACAGGACTTCTTGGGAGATGATTTCAAGAGCCAGGGATCCCATGTTTCATATCATGTTGCTGACTTCTCTACACAGGCTTCTCAAAGTGGATATGCTGTTGATTATGTAAATCAGGGAGCACAGGCTGGTTTTCCAGGAAATTATTTGAACCGGAATTCACAAGCTGGATACTCACGTTTTGGTTCAGGAAATGAATTTATGTCACAGGATTACATGACTTATGGATCCCAAGGTCTCTTCACACAAGCTGGATACAGCGATCCATCACAAGAGGACAGTTCACAAAACCATTTTGGCATGTCCAATGCAAATCCACTTCACTCTCAGAGTTTACTCAATCCACTGTACTCGCAGCCTTTTGGGCATTACAACACCCAACCATTGAACATGCAAAGTTCCCAACCTCAACAGCCTCAAGCCCCACAAGTCCAAGGCTCACAAAATCAGAAACTCCATTACAACGGTTAAGGACCACCAGTTTGTGGCTTTATGGATTATGGTTTTGCATCCAGCAACTTGGTTTGTGCTGTCATGTTTGACTGTATTTTCTATGTAAGATGGAGTAAGAGTGCTGAAATTCAGGTCAGTTGGTGACAGTATGATGACTCTGAATGATTTGATTTTGAGGGATGAGGTGGAGGAAGGCTCTCTGATAAAGAAAAGCATGGGCAGCACATCCGGTGCTGAGAAAGGTGAAACAAGCTTGAGGTTGTGTGCTGTGCAAGAGAAGGTGACTATTTATTCAGGAGAGAACATTACATGGCATGGAATTAGTCGGAGGGTGCCGGTTGTTATTACAGCCATGCTTGGAAGCTGCTAGCACTATCGTCCTGTACAGGTATTCTGGCAAAAATCAGCATAATCCTTTCAGCTCTTCCTGACATGTAACTAATACTCACTAGTAAGTAGACTATGTGATGGATGTGTTTGTTAATAATGCA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc08g077420.2.1SL2.50ch08:61276958..612894011,275+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc08g077420.2SL2.50ch08:61276784..6128987413,091+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc08g077420.2.1.1SL2.50ch08:61276784..61277492709+n/a
exonexon:Solyc08g077420.2.1.10SL2.50ch08:61282541..61282663123+1
exonexon:Solyc08g077420.2.1.11SL2.50ch08:61282765..6128283672+n/a
exonexon:Solyc08g077420.2.1.12SL2.50ch08:61283315..6128338672+n/a
exonexon:Solyc08g077420.2.1.13SL2.50ch08:61283488..6128355467+n/a
exonexon:Solyc08g077420.2.1.14SL2.50ch08:61283720..61283862143+n/a
exonexon:Solyc08g077420.2.1.15SL2.50ch08:61284011..6128408272+2
exonexon:Solyc08g077420.2.1.16SL2.50ch08:61284157..61284285129+n/a
exonexon:Solyc08g077420.2.1.17SL2.50ch08:61284952..61285107156+n/a
exonexon:Solyc08g077420.2.1.18SL2.50ch08:61285379..61285492114+n/a
exonexon:Solyc08g077420.2.1.19SL2.50ch08:61285826..6128592499+n/a
exonexon:Solyc08g077420.2.1.2SL2.50ch08:61279540..61279791252+n/a
exonexon:Solyc08g077420.2.1.20SL2.50ch08:61285999..6128607678+n/a
exonexon:Solyc08g077420.2.1.21SL2.50ch08:61286450..61286584135+n/a
exonexon:Solyc08g077420.2.1.22SL2.50ch08:61286908..6128698275+n/a
exonexon:Solyc08g077420.2.1.23SL2.50ch08:61287095..61287212118+n/a
exonexon:Solyc08g077420.2.1.24SL2.50ch08:61287800..61288167368+n/a
exonexon:Solyc08g077420.2.1.25SL2.50ch08:61288256..6128831863+2
exonexon:Solyc08g077420.2.1.26SL2.50ch08:61288390..6128846172+n/a
exonexon:Solyc08g077420.2.1.27SL2.50ch08:61288599..61288730132+n/a
exonexon:Solyc08g077420.2.1.28SL2.50ch08:61288923..61289042120+n/a
exonexon:Solyc08g077420.2.1.29SL2.50ch08:61289261..61289874614+n/a
exonexon:Solyc08g077420.2.1.3SL2.50ch08:61279878..61280048171+n/a
exonexon:Solyc08g077420.2.1.4SL2.50ch08:61280185..6128023551+n/a
exonexon:Solyc08g077420.2.1.5SL2.50ch08:61280755..6128084793+n/a
exonexon:Solyc08g077420.2.1.6SL2.50ch08:61281003..6128109896+n/a
exonexon:Solyc08g077420.2.1.7SL2.50ch08:61281278..6128132851+n/a
exonexon:Solyc08g077420.2.1.8SL2.50ch08:61281455..61281573119+n/a
exonexon:Solyc08g077420.2.1.9SL2.50ch08:61281983..61282091109+n/a
intronintron:Solyc08g077420.2.1.1SL2.50ch08:61277493..61279539n/a+n/a
intronintron:Solyc08g077420.2.1.10SL2.50ch08:61282664..61282764n/a+n/a
intronintron:Solyc08g077420.2.1.11SL2.50ch08:61282837..61283314n/a+n/a
intronintron:Solyc08g077420.2.1.12SL2.50ch08:61283387..61283487n/a+n/a
intronintron:Solyc08g077420.2.1.13SL2.50ch08:61283555..61283719n/a+n/a
intronintron:Solyc08g077420.2.1.14SL2.50ch08:61283863..61284010n/a+n/a
intronintron:Solyc08g077420.2.1.15SL2.50ch08:61284083..61284156n/a+n/a
intronintron:Solyc08g077420.2.1.16SL2.50ch08:61284286..61284951n/a+n/a
intronintron:Solyc08g077420.2.1.17SL2.50ch08:61285108..61285378n/a+n/a
intronintron:Solyc08g077420.2.1.18SL2.50ch08:61285493..61285825n/a+n/a
intronintron:Solyc08g077420.2.1.19SL2.50ch08:61285925..61285998n/a+n/a
intronintron:Solyc08g077420.2.1.2SL2.50ch08:61279792..61279877n/a+n/a
intronintron:Solyc08g077420.2.1.20SL2.50ch08:61286077..61286449n/a+n/a
intronintron:Solyc08g077420.2.1.21SL2.50ch08:61286585..61286907n/a+n/a
intronintron:Solyc08g077420.2.1.22SL2.50ch08:61286983..61287094n/a+n/a
intronintron:Solyc08g077420.2.1.23SL2.50ch08:61287213..61287799n/a+n/a
intronintron:Solyc08g077420.2.1.24SL2.50ch08:61288168..61288255n/a+n/a
intronintron:Solyc08g077420.2.1.25SL2.50ch08:61288319..61288389n/a+n/a
intronintron:Solyc08g077420.2.1.26SL2.50ch08:61288462..61288598n/a+n/a
intronintron:Solyc08g077420.2.1.27SL2.50ch08:61288731..61288922n/a+n/a
intronintron:Solyc08g077420.2.1.28SL2.50ch08:61289043..61289260n/a+n/a
intronintron:Solyc08g077420.2.1.3SL2.50ch08:61280049..61280184n/a+n/a
intronintron:Solyc08g077420.2.1.4SL2.50ch08:61280236..61280754n/a+n/a
intronintron:Solyc08g077420.2.1.5SL2.50ch08:61280848..61281002n/a+n/a
intronintron:Solyc08g077420.2.1.6SL2.50ch08:61281099..61281277n/a+n/a
intronintron:Solyc08g077420.2.1.7SL2.50ch08:61281329..61281454n/a+n/a
intronintron:Solyc08g077420.2.1.8SL2.50ch08:61281574..61281982n/a+n/a
intronintron:Solyc08g077420.2.1.9SL2.50ch08:61282092..61282540n/a+n/a
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