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| Unigene Basic Information |
| Unigene ID: | SGN-U280093 |
| Unigene Build: | Solanum tuberosum #4 |
| Date: | 2005-05-04 |
| Organism: | S.tuberosum |
| Alternative ID: | 280093 |
| mRNA sequence: | Length: 437 bp |
>SGN-U280093 Solanum tuberosum #4 (3 members)
CCTGGAGAAGGTACTAGACACCTTAAATCCAAGGGAGAAGCAGGTTGTTAGATGGCGATTTGGACTAGAGGATGGCAGGATGAAGACATT
ACAAGAGATTGGTGAGTTAATGGGCGTTAGCCGGGAGAGAATTCGCCAAATAGAGTCTTGTGCATTCCGTAAGTTGAAGAACAAGAAAAG
AACAAAGTTTTTGCAGCAATATATAAATGCTTAAAGTCTCTGTTATATATATATCGAGAAAGTAGATATGACCTTCTAGTCATTGAGTCT
TTGTTGTTAGAAAAATTTGAGGCTTAGATAAGCTTTGGTTCTTTAACTGTTCTTATTCTTCAGAACTCTGCAAATATGTTGTGCATAATA
CAAAATTTTGGCTCAAATAATCAGATATTGTAATTTATTGTAGCAAAACACAATTAGTTGGTAAAAACTCGAGGGGG
[Blast] [AA Translation]
| Associated Loci (0) | None |
| Genomic locations (0) | None |
 Library representation (2)
 Library representation (2)
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| Organism | Library | Description | Library size (#ESTs) | Ests in this Unigene |
|---|---|---|---|---|
| Solanum tuberosum | PPC | leaf 6 week old | 5062 | 1 |
| Solanum tuberosum | STM | mixed tissues | 14805 | 2 |
| mRNA member sequences (3)
mRNA member sequences (3)
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To view details for a particular member sequence, click the SGN-E# identifier.
| Markers Information (0)
Markers Information (0)
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Unigene Mapped Marker Information
No member sequence or clone is mapped.
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COSII Markers Information
None cosii markers associated to this unigene.
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| Expression Data (0)
Expression Data (0)
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No expression data was found associated to this unigene
| Annotations (manual: 0 | blast: 3 | go: 0 )
Annotations (manual: 0 | blast: 3 | go: 0 )
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Manual annotations
None manual annotation was found for this unigene
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Blast Annotations [Show All]
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GO Terms Annotations
No Gene Ontology annotation
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| Protein prediction analysis (3)
Protein prediction analysis (3)
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Prediction based on longest six frame method
>SGN-P222019 (70 Aa)
>SGN-P222019 (70 Aa)
LEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYINA
SignalP predicts non-secretion with a score of 0.027
No InterPro domain matches or not analyzed.
Prediction based on ESTScan [ Show ESTScan Detail]
>SGN-P82981 (70 Aa)
LEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYINA
SignalP predicts non-secretion with a score of 0.027
No InterPro domain matches or not analyzed.
Prediction based on longest six frame method
>SGN-P222020 (70 Aa)
AFIYCCKNFVLFLFFNLRNAQDSIWRILSRLTPINSPISCNVFILPSSSPNRHLTTCFSLGFKVSSTFSR
SignalP predicts secretion with a score of 0.613
No InterPro domain matches or not analyzed.
| Gene Family (6)
Gene Family (6)
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| Family Build (I value*) | Family ID | Annotation** | # Members |
|---|---|---|---|
| 1.2 | 627 | Sigma70_r2 Sigma_70 Sigma70_r3 Sigma70_r4 | 29 |
| 2 | 23434 | Sigma70_r2 Sigma_70 Sigma70_r3 Sigma70_r4 | 13 |
| 5 | 63419 | HTH_10 Sigma70_r2 Sigma_70 HTH_LuxR Sigma70_r3 Sigma70_r4 | 3 |
| 1.1 | 101901 | Sigma factor region 2 Sigma-70 region 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Sigma factor regions 3 and 4 Sigma-70 region 4 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Sigma-70 region 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Sigma-70 factor - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) | 29 |
| 2 | 119538 | Sigma factor regions 3 and 4 Sigma-70 region 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Sigma factor region 2 Sigma-70 factor - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Sigma-70 region 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Sigma-70 region 4 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) | 14 |
| 5 | 134509 | Sigma factor regions 3 and 4 Sigma-70 region 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Sigma factor region 2 Sigma-70 factor - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Sigma-70 region 1.2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Sigma-70 region 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) Winged helix repressor DNA-binding Sigma-70 region 4 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: transcription initiation (GO:0006352) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sigma factor activity (GO:0016987) | 3 |
*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.
| Preceding Unigenes (1)
Preceding Unigenes (1)
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| Unigene | Build |
|---|---|
| SGN-U253312 | Solanum tuberosum #3 |
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