Sol Genomics Network

Unigene SGN-U580064

Unigene Basic Information

Unigene ID:	SGN-U580064
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1926 bp

>SGN-U580064 Tomato 200607 #2 (541 members)
GGGCGATTGGCGGCCAATCGGCCGAATTGGCTGGGGGCTCACGAGAATTCTGTGTTAAACAAATTTAAAGCTTATTGTTTACTCTTTTCT
CCTCCAAATTTCTAGGGTTTCTCTCGAAGAATTTTCTGATTTGGGAAGATTGTGATTCGTTTGGGAAAAGTTGGATTAGGAACAAACATC
AAAAAATTTATATTGTGAATGATCTAATGGAGTCAAAAGGTGGTAAAAAGAAGTCTAGTAGTAGTAGTTCCTTATTTTACGAAGCTCCCC
TCGGCTACAGCATTGAAGACGTTCGACCAAACGGCGGAGTGAAGAAGTTCAGATCAGCTGCTTACTCCAACTGCGCGCGCAAACCATCCT
GATATTCCCTAAACTTCCTTCCTTAAAGCGTCAATAGACGCAACCAAAAAAAAAAACAAAAAAATAATTTCTGCTTTCAGTTTCTTCTTT
TGTAAAACCCTCACTCCTTTTCTTCCTTCTTTTACTACTTCCTGCTTTTGCACTCATTGCTTTGAACATTTTCCGCTTTAACTTCCTTTG
CTGTTGTGAACTTTTTCATAATGGAAATGGACTTGCCAGTTTCTGCCATTGGTTTTGAAGGTTTCGAAAAGAGGCTCGAAATTTCTTTCG
TCGAGCCTGGTCTGTTTGCTGATCCTAATGGAAAAGGACTTCGATCTCTCACAAAGGCACAGTTGGATGAAATTCTCGGACCTGCTGAGT
GCACCATTGTTGATAACCTGTCAAATGACTATGTTGATTCCTATGTGCTGTCCGAGTCGAGCCTCTTCGTTTATTCTTACAAGATAATCA
TCAAAACATGTGGTACCACAAAGCTGCTTCTTGCAATTCCGCCCATTCTGAGGTTGGCTGAGACCTTGTCTCTCAAAGTACAAGACGTGA
GGTATACCCGTGGGAGCTTCATTTTCCCTGGTGCTCAATCGTTTCCTCACCGCCACTTTTCTGAAGAAGTTGCTGTCCTCGATGGATATT
TTGGAAAGCTTGCTGCCGGTAGCAAGGCTGTGATTATGGGAAATCCCGACAAAACACAGAAATGGCATGTCTACTCTGCCTCAGCTGGGA
CTGTTCAGTGTAATGACCCTGTTTACACTCTTGAGATGTGTATGACTGGTTTGAACAGGGAGAAGGCATCTGTCTTCTACAAAACTGAAG
AAAGTTCGGCTGCTCACATGACTGTTAGATCTGGCATCAGGAAGATCCTCCCCAAGTCTGAGATATGTGATTTTGAGTTTGAACCCTGTG
GTTATTCTATGAATTCTATTGAAGGAGCTGCTGTTTCAACCATTCACATTACCCCGGAGGACGGCTTTAGCTATGCCAGCTTTGAATCTG
TTGGATATGATCCTAAAACCAATGAGTTGGGTCCCCTGGTTGAGAGGGTGCTTGCATGTTTTGAGCCAGCTGAGTTCTCTATTGCTCTGC
ATGCTGATGTTGCTACCAAGTTACTGGAGCATGTTTGCTCTGTTGATGTTAAGGGCTACTCTCTTGCTGAGTGGAGTCCAGAAGAGTTTG
GCAAAGGCGGTTCCATTGTCTACCAGAAGTTCACTAGAACTCCTTACTGTGAATCTCCCAAGTCCGTTCTGAAGGGCTGCTGGAAGGAGG
AAGAGAAAGAAGGAAAGGAGTAGTGTTGTCTTGAGGGTCGTATTGTTGTTTTTATTTCAGTGTCTGTTGTTTTCTCAGAATAATGGACTT
ATACGTCCAAACTTGTGTCTGTTGGGATTTGCAACGTCTGTGTGCAATTTCTCAACTAGTCTTGCCTTTTGGTGTTCCACCAGAAGCCTT
TTATGTTTCTGCACTTTGAATTGTGTCATGTTGTTGGTTTCTGTTCCTGTTGCGTCTATTTATAAAAGTGTGTTTGTTTTGTGTAAAAAA
AAAGCCTCTCCTGTTTTTCAAGTTGTTTCTCTCGTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
samdc	S-adenosylmethionine decarboxylase	S-adenosylmethionine decarboxylase

Genomic locations (0)

None

Library representation (44)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	38
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	7
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	29
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	3
Solanum lycopersicum	LeMiToFr02	fruit	18697	23
Solanum lycopersicum	LeMiToLf01	leaf	30679	36
Solanum lycopersicum	LePU	Pericarp Turning stage of fruit ripening.	1542	10
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	39
Solanum lycopersicum	Sl_LeafCherry01	epidermis	226	1
Solanum lycopersicum	Sl_RootN	Roots 5 weeks	165	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	20
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	17
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	107
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	13
Solanum lycopersicum	cLES	leaf 4 weeks	5243	14
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	6
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	11
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	14
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	32
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	11
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	16
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	16
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	11
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	6
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (541)

Alignment image suppressed for unigene with 541 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (5)

Unigene	Build
SGN-U314524	Tomato 200607 #1
SGN-U314536	Tomato 200607 #1
SGN-U314537	Tomato 200607 #1
SGN-U314538	Tomato 200607 #1
SGN-U338774	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: