Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580064 and SGN-U581125 in the current build, Tomato 200607 #2

Unigene SGN-U314538

Unigene Basic Information

Unigene ID:	SGN-U314538
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314538
mRNA sequence:	Length: 1946 bp

>SGN-U314538 Tomato 200607 #1 (357 members)
GTGATCAAAAAGTTCCCTGTTTATGGGCGATTGGCGGCCAATCGGCCGAATTGACGAGAATTCTGTGTTAAGAACAAATTTAAAGCTTAT
TGTTTACTCTTTTCTCCTCCAAATTTCTAGGGTTTCTCTCGAAGAATTTTCTGATTTGGGAAGATTGTGATTCGTTTGGGAAAAGTTGGA
TTAGGAACAAACATCAAAAAATTTATATTGTGAATGATCTAATGGAGTCAAAAGGTGGTAAAAAGAAGTCTAGTAGTAGTAGTTCCTTAT
TTTACGAAGCTCCCCTCGGCTACAGCATTGAAGACGTTCGACCAAACGGCGGAGTGAAGAAGTTCAGATCAGCTGCTTACTCCAACTGCG
CGCGCAAACCATCCTGATATTCCCTAAACTTCCTTCCTTAAAGCGTCAATAGACGCAACCAAAAAAAAAAACAAAAAAATAATTTCTGCT
TTCAGTTTCTTCTTTTGTAAAACCCTCACTCCTTTTCTTCCTTCTTTTACTACTTCCTGCTTTTGCACTCATTGCTTTGAACATTTTCCG
CTTTAACTTCCTTTGCTGTTGTGAACTTTTTCATAATGGAAATGGACTTGCCAGTTTCTGCCATTGGTTTTGAAGGTTTCGAAAAGAGGC
TCGAAATTTCTTTCGTCGAGCCTGGTCTGTTTGCTGATCCTAATGGAAAAGGACTTCGATCTCTCACAAAGGCACAGTTGGATGAAATTC
TCGGACCTGCTGAGTGCACCATTGTTGATAACCTGTCAAATGACTATGTTGATTCCTATGTGCTGTCCGAGTCGAGCCTCTTCGTTTATT
CTTACAAGATAATCATCAAAACATGTGGTACCACAAAGCTGCTTCTTGCAATTCCGCCCATTCTGAGGTTGGCTGAGACCTTGTCTCTCA
AAGTACAAGACGTGAGGTATACCCGTGGGAGCTTCATTTTCCCTGGTGCTCAATCGTTTCCTCACCGCCACTTTTCTGAAGAAGTTGCTG
TCCTCGATGGATATTTTGGAAAGCTTGCTGCCGGTAGCAAGGCTGTGATTATGGGAAATCCCGACAAAACACAGAAATGGCATGTCTACT
CTGCCTCAGCTGGGACTGTTCAGTGTAATGACCCTGTTTACACTCTTGAGATGTGTATGACTGGTTTGAACAGGGAGAAGGCATCTGTCT
TCTACAAAACTGAAGAAAGTTCGGCTGCTCACATGACTGTTAGATCTGGCATCAGGAAGATCCTCCCCAAGTCTGAGATATGTGATTTTG
AGTTTGAACCCTGTGGTTATTCTATGAATTCTATTGAAGGAACTGCTGTTTCAACCATTCACATTACCCCGGAGGACGGCTTTAGCTATG
CCAGCTTTGAATCTGTTGGATATGATCCTAAAACCACTGAGTTGGGTCCCCTGGTTGAGAGGGTGCTTGCATGTTTTGAGCCAGCTGAGT
TCTCTATTGCTCTGCATGCTGATGTTGCTACCAAGTTACTGGAGCATGTTTGCTCTGTTGATGTTAAGGGCTACTCTCTTGCTGAGTGGA
GTCCAGAAGAGTTTGGCAAAGGCGGTTCCATTGTCTACCAGAAGTTCACTAGAACTCCTTACTGTGAATCTCCCAAGTCCGTTCTGAAGG
GCTGCTGGAAGGAGGAAGAGAAAGAAGGAAAGGAGTAGTGTTGTCTTGAGGGTCGTATTGTTGTTTTTATTTCAGTGTCTGTTGTTTTCT
CAGAATAATGGACTTATACGTCCAAACTTGTGTCTGTTGGGATTTGCAACGTCTGTGTGCAATTTCTCAACTAGTCTTGCCTTTTGGTGT
TCCACCAGAAGCCTTTTATGTTTCTGCACTTTGAATTGTGTCATGTTGTTGGTTTCTGTTCCTGTTGCGTCTATTTATAAAAGTGTGTTT
GTTTTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
samdc	S-adenosylmethionine decarboxylase	S-adenosylmethionine decarboxylase

Genomic locations (0)

None

Library representation (34)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	42
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	7
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	26
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	21
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	16
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	57
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	10
Solanum lycopersicum	cLES	leaf 4 weeks	5243	13
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	8
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	12
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	8
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	35
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	11
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	16
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	16
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	9
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (357)

Alignment image suppressed for unigene with 357 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101790	S-adenosylmethionine decarboxylase - Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014) - Biological Process: spermine biosynthesis (GO:0006597) - Biological Process: spermidine biosynthesis (GO:0008295)	37
2	118684	S-adenosylmethionine decarboxylase - Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014) - Biological Process: spermine biosynthesis (GO:0006597) - Biological Process: spermidine biosynthesis (GO:0008295)	36
5	129148	S-adenosylmethionine decarboxylase - Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014) - Biological Process: spermine biosynthesis (GO:0006597) - Biological Process: spermidine biosynthesis (GO:0008295)	36

Preceding Unigenes (2)

Unigene	Build
SGN-U212634	Lycopersicon Combined #3
SGN-U212637	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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