Clone Read LE_HBa0050N16_T7_11023

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0050N16_T7_11023
Primer
T7
ID from Seq. Facility
LE_HBa_050_N16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
785 trimmed for vector and quality, 836 raw
Genbank Accession
DU029942
Sequence
>LE_HBa0050N16_T7_11023 (raw untrimmed)
CCGGGTTACCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTACTACCCGCAATCCAATTATCCCAATAATCATAATAATACCGTCACTTATCC
AAAAGCCCAAATTTTGCCGTACCAAAGTCCACCCCTATATCTCCAAAATTTTGACCCAAATTACGCTCAACCTTACCAAATTCCATCTCCCTATCAAAAT
ATGCTCCCAATTGTGCCAATATACAGTGGAGCTACCGAGGAACCCCGCCCATTTATCAAGTCCAGGCTCCATTATACAAAAATCCCCTTCCAAATTACCA
AGCTCCATCGCCAAATTATCAAACAAACCCATATCCTAGAAATCAAGCTCCCCGTCCGAATACCCAAAATTACCAGCAGGTGCCTCCCACTCAGCAAAGC
AGTTATGACCCTTCCCGACCCAGATTAGAAATGAGGCCCTCAAGGAACTTTACTGCACTTGCTGAAAGCCTGACCAAACTGTATGAGATACTGGCTGCGG
CTGGATAGATCCACCATTTGGGGCCCAAGCCTGTGAATGTCAATTTAAAGTTCTAAAAGCCAGATCAAAGATGTGCTAATCATTTCAACAGTATTGGACA
TGACACAAAAGATTGTATCAACCTCAAGCACAAAATCTAGGATCTGATCGATCAGGAGGTAGTTTCTCTCCAACCGGCGGCGCCAAATGTCAATACAAAC
CCGTTGCCGAATCATGGAGGTGGCAATGTTAATATGATTGAAACGGATGAAGACTGGTGTGGAACGAAGATGATTACTCCCATTGTGCATGAGGACTTGG
AAAGGTTTGTCGCTTCTTTAAGCGTCAAAGAAAGGA
>LE_HBa0050N16_T7_11023 (trimmed for quality and cloning vector)
AGCTTACTACCCGCAATCCAATTATCCCAATAATCATAATAATACCGTCACTTATCCAAAAGCCCAAATTTTGCCGTACCAAAGTCCACCCCTATATCTC
CAAAATTTTGACCCAAATTACGCTCAACCTTACCAAATTCCATCTCCCTATCAAAATATGCTCCCAATTGTGCCAATATACAGTGGAGCTACCGAGGAAC
CCCGCCCATTTATCAAGTCCAGGCTCCATTATACAAAAATCCCCTTCCAAATTACCAAGCTCCATCGCCAAATTATCAAACAAACCCATATCCTAGAAAT
CAAGCTCCCCGTCCGAATACCCAAAATTACCAGCAGGTGCCTCCCACTCAGCAAAGCAGTTATGACCCTTCCCGACCCAGATTAGAAATGAGGCCCTCAA
GGAACTTTACTGCACTTGCTGAAAGCCTGACCAAACTGTATGAGATACTGGCTGCGGCTGGATAGATCCACCATTTGGGGCCCAAGCCTGTGAATGTCAA
TTTAAAGTTCTAAAAGCCAGATCAAAGATGTGCTAATCATTTCAACAGTATTGGACATGACACAAAAGATTGTATCAACCTCAAGCACAAAATCTAGGAT
CTGATCGATCAGGAGGTAGTTTCTCTCCAACCGGCGGCGCCAAATGTCAATACAAACCCGTTGCCGAATCATGGAGGTGGCAATGTTAATATGATTGAAA
CGGATGAAGACTGGTGTGGAACGAAGATGATTACTCCCATTGTGCATGAGGACTTGGAAAGGTTTGTCGCTTCTTTAAGCGTCAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.969395
Expected error %
0.414864
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 186 E Value 6e-46 Identity 21.80% Align. Length 416bp (52.99%) Frame 2
gag-pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82037.1| Score 79 E Value 1e-13 Identity 12.80% Align. Length 404bp (51.46%) Frame 2
gag/pol polyprotein [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0050N16
Clone
Clone name
hba-50n16
LE_HBa0050N16
C10HBa0050N16
P050N16
Clone type
BAC
Contamination
none
Estimated length
60,757
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found