Clone hba-50n16

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Clone
Clone name
hba-50n16
LE_HBa0050N16
C10HBa0050N16
P050N16
Clone type
BAC
Contamination
none
Estimated length
60,757
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
cLET-3-F16Tomato-EXPEN 2000plate 6C4
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 10
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 10 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 10
HTGS phase
1 - fragmented, unordered
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
104,164 bp
C10HBa0050N16.6
AC244743.7 (GenBank) 		[View]
End Sequences
Warnings
  • sequence is not finished to HTGS3
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 104,164 is 71.4% different from estimated length 60,757
 FTP
Chromosome 10 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (12)
2089, 2405, 2512, 2667, 2834, 4426, 4986, 5722, 5996, 7495, 8879, 10746
HindIII in silico (31)
1052, 1052, 1072, 1158, 1338, 1429, 1471, 1567, 1584, 1822, 2018, 2082, 2093, 2142, 2403, 2432, 2538, 2555, 2685, 2869, 3628, 3759, 3981, 4356, 4770, 4778, 5288, 5693, 7354, 8835, 10464
Fragment Lengths Match Score
0.62
Annotations  
Browse
LE_HBa0050N16 has no browsable sequence annotations
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Seq. Center Reported Status
Estimated Length
 and  bp
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e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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