Solanum lycopersicum mRNA Solyc08g065490.2.1

mRNA details  
Name
Solyc08g065490.2.1
Type
mRNA
Length
2,057
Organism
Solanum lycopersicum
Description
Serine hydroxymethyltransferase (AHRD V1 **** B9S1D7_RICCO); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase
Location(s)
SL2.50ch08:53602357..53606594
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006563
  • GO:0030170
Length
4238
Nb exon
12
Sifter term
GO:0004372
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc08g065490.2.1 Serine hydroxymethyltransferase (AHRD V1 **** B9S1D7_RICCO); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase

TTGAAATGAATGAAACATATTCGAGATATTAGTGCATGAGCGGCGCGCGAATTTCCAAGCTAGGGTTCTTTTTCTTCACCTTGTGTTGTTCCTATATATTCCCAGAGTTCTACAAACGCAAAACTGAAAATCTAGTGAAATTTCAATAAGAAAACTGAATTTTGAATTGAAGGGTTGCTGTTAATTAGTTGCATCATGGAAGCTTGTTGTGGAGCTGCGGTTATGAGTTCTCTTCAGCAGCCTGTTTGGGTTAAAGGGTCAGCTTTTCCTTCAAAAGGGGTTGCTGGTATTAATGTAAATTCGAGTCGGGTAAAGTTATGCTCTGTCAAGCCCTGTAGAGCAACTCCAACTGAATGGAGCTTGATAACAGAAAGGCCTACTTCTTCTGCTCCTGAAGGTGCTGGGAGCAGCTTTGAAGACTATGGGTTGCATGAAGCTGATCCTGATGTTCGTACTATTATTGACAAAGAGAAGCAGCGTCAGTTTAGGAGCTTAGAACTTATTGCCTCTGAGAATTTCACATCTCGAGCAGTGATGGAAGCAGTTGGTTCTTGCCTTACCAACAAATATTCTGAAGGGCTTCCAGGCAAAAGATATTATGGTGGGAATGAATACATCGATGAGTTGGAAACTCTCTGTCAAGAAAGAGCATTGGCTGCCTTTAGCTTAGATGGAAAACAATGGGGTGTGAATGTTCAACCATTATCTGGCTCTCCGGCAAATTTTGCAGTTTACACAGCGGTTCTTAATCCACACGACCGGATTATGGGATTGGACTTACCTCATGGTGGCCACTTGTCCCATGGATTTATGACTCCAAAAAGACGGGTTTCAGGCACCTCGATTTACTTTGAATCCATGCCTTATCGACTTGATGAATCTACAGGTATTCTCGATTATGAAATGCTTGAGAAAACAGCGAATCTTTTTCGCCCAAAGCTTATTATTGCTGGTGCAAGTGCATATCCGCGTGATTTTGATTATCCTCGTTTGAGAAAGATAGCAGATGCTGTTGGAGCTTTCCTAATGATGGATATGGCTCATATCAGTGGGCTTGTAGCTGCTTCTGTACTTGCTAATCCATTTGAATACTGTGACATTGTTACTACTACTACTCACAAGTCTCTTAGAGGTCCTAGAGGTGGAATGATCTTCTTCAAAAAAGATCCAGTTCTGGGAATGGATCTTGAATCTGCCATAAACAATGCTGTTTTTCCTGGTTTGCAGGGTGGTCCTCATAATCACACAATTGGAGGACTAGCTGTTTGCTTGAAGCATGCCAAATCACCTGAATTTAAGGTTTATCAGAACCAGGTGGTTGCCAACTGTAGAGCTCTTGCAAGCCGATTAATGGAATTAGGCTACAAGCTGGTCTCAGGAGGGAGCGACAATCATTTGGTTCTTGTGGATTTGCGGCCCATGGGAATTGATGGTGCTAGAGTGGAGAAAATACTCGACATGGCATCAATCACTCTCAATAAGAATTCAGTGCCTGGTGATAAAAGCGCACTAGTACCGGGTGGCATCCGCATAGGCTCACCAGCCATGACCACTCGAGGTTTTACAGAGAAGGAATTTGTATCAGTTGCAGATTTTATTCACGAGGGTGTGCAAATTACCCTTGAAGCCAAGAAGTCCGTCTCTACTACCAAACTCCAAGATTTCATGAAGGTTGTTACATCCCCAGATTTTAGTTTGATGGATAAGGTGTTGGACTTGCAAAAAAGAGTCGAAGCTTTGACGTCCCAGTATCCTTTGCCTGGTTTATGAAATGAAGGCCAAATTGCCTGATGGATGATAATTACATGCAAGCTAACCCTTTCGTCCTACTGAATTTTGCAATGTGTTGTTTAGAATACCTGAAGATCATCTATGTTTCTTCTCCTGGGAAATGTAGCAGACTCATAATCCATGGCTGTTGCAAAAACAATTGAATCAATTTCGAAACTATATCATGGAAATTGTAGTTGAGTTCAGTCAATTTGTTGGAATTTGAATATCTACAATCCTACATATGTGATTTCACAGTAAATGTCATGAGGCAGCGACAGAGTCGG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc08g065490.2.1SL2.50ch08:53602643..53606313525-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc08g065490.2SL2.50ch08:53602357..536065944,238-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc08g065490.2.1.1SL2.50ch08:53606445..53606594150-n/a
exonexon:Solyc08g065490.2.1.10SL2.50ch08:53603235..53603342108-n/a
exonexon:Solyc08g065490.2.1.11SL2.50ch08:53602996..5360306873-2
exonexon:Solyc08g065490.2.1.12SL2.50ch08:53602357..53602918562-n/a
exonexon:Solyc08g065490.2.1.2SL2.50ch08:53606112..53606358247-2
exonexon:Solyc08g065490.2.1.3SL2.50ch08:53605002..53605197196-1
exonexon:Solyc08g065490.2.1.4SL2.50ch08:53604730..53604904175-n/a
exonexon:Solyc08g065490.2.1.5SL2.50ch08:53604523..53604640118-2
exonexon:Solyc08g065490.2.1.6SL2.50ch08:53604333..53604445113-n/a
exonexon:Solyc08g065490.2.1.7SL2.50ch08:53604113..53604235123-n/a
exonexon:Solyc08g065490.2.1.8SL2.50ch08:53603675..53603779105-n/a
exonexon:Solyc08g065490.2.1.9SL2.50ch08:53603420..5360350687-n/a
intronintron:Solyc08g065490.2.1.10SL2.50ch08:53603343..53603419n/a-n/a
intronintron:Solyc08g065490.2.1.11SL2.50ch08:53603069..53603234n/a-n/a
intronintron:Solyc08g065490.2.1.12SL2.50ch08:53602919..53602995n/a-n/a
intronintron:Solyc08g065490.2.1.2SL2.50ch08:53606359..53606444n/a-n/a
intronintron:Solyc08g065490.2.1.3SL2.50ch08:53605198..53606111n/a-n/a
intronintron:Solyc08g065490.2.1.4SL2.50ch08:53604905..53605001n/a-n/a
intronintron:Solyc08g065490.2.1.5SL2.50ch08:53604641..53604729n/a-n/a
intronintron:Solyc08g065490.2.1.6SL2.50ch08:53604446..53604522n/a-n/a
intronintron:Solyc08g065490.2.1.7SL2.50ch08:53604236..53604332n/a-n/a
intronintron:Solyc08g065490.2.1.8SL2.50ch08:53603780..53604112n/a-n/a
intronintron:Solyc08g065490.2.1.9SL2.50ch08:53603507..53603674n/a-n/a
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