Sol Genomics Network

Solanum lycopersicum gene Solyc07g040990.2

Name Solyc07g040990.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc07g040990	Length 3,227

Description

Protein phosphatase 2C (AHRD V1 ***- A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C

Location(s)

SL2.50ch07:51485207..51488433

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3227

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc07g040990.2.1	SL2.50ch07:51485207..51488433	1,936	+	n/a

Add items to a list:

Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc07g040990.2 SL2.50ch07:51485207..51488433
ATGCAAGATTGTTTTGAAACGGTAAGCAACTTCTCACTTACCTTCCTACCTTTTTTTCATTATTATGAGTATTTGTTTATTGGATTATTGTATTCATTGATTTGTGTATCTAATCAAACCTTGTTTTTGTATGTACAATATAATACCCACAATAAATATTGAATGATTATTATCTCTAATAACAAATCCTTGCATGCACCATTTCTTGATTTGTTTGACCCTTGAACTACATGGGGTTTTCACAAACTTTTTTTTTTTTGATTCAACTAACTTTAGGTAACCAAGAAGAAGTTGGGTTGCTTTGAATTTGGAAAAAAGTTTCATGTATGGTCTGCTTTGTGCTTGTAAGTCCTTTTTTTTTTCCATAAAGATTGAATCTTTATATGTTGTGTCTCTGTCTTGTTAAGCAGTGACCACTAGATTTGTTGTTTCCTATATATTATAAGTTGATGAAAAGTGATTCTCTGTTTAGGGGGTTTGTTGGTAATGTGTTGTTGAATGGATAGAATTGGAATAGAAGAGTACAAGATGCTGAATAGGGTTATATGGATAGTGATTCCACAAGTTTGGACTTTGGATCCATATTCTCTTATGTCATAGATTTATTCTGTTTTTTGTTTTTGTCAAACCTTTTGTTGGCTTAAAAATTAAGTAAATTTTAGGGATTTGAATAATTTTGGTTGGTTAGAAGAAAGGTACTGATGGAAGAGATGTTTCCAACACTTGCTGTATCATATAAACAGGGAAAATTGATATATGATGAATCAGTATTACCTACATGTATTGACTTTGCTGGATATGAGCTGATCCCCAATACAACTAGCTTGCTGTCAGAACCTAACAAGTGCAAACTTCCTTGTTCGGTGTCGAATCATAGAGTGTCCAGGGACAAAGCTAACCTTTTTATGACAGTTGCTGATTGTCATGAAATCAGGATAGGGAAGAGTTTTTCTTCGACAGTTGTAGGTAATGGGAATTGTTTGATTGCTAGTGAGGTAGAAGATGGTAGATCTATGGACAACAATTTGATTTCACCAACTGATGAGCTTTTAGGAAATATGACTTGTTCTGATTCTCTAGTTGATGAGCGTGTCAGCATGCCTAACCAAGAATGTACAGGTTTGGAGGTTAAGGTTGGGAAAATGCCTCCTCGGGATGAGGAAAAGAAGGTTGGTGTATCCCAGATTCTGAGAAAGTCTTTTTCGTGTAGTTTGGCTAATGAGTTGGTTAATGAGTCACAACTTGTAAGTGATATTGTTTCCACCATGGTTGTGGGTGCTGAAGATTATAAAAGAAAATTATCACCATCCCATCTTGAGACCTCACAAGAGATAAAGATAAGCAGGCCAAATACCCTTTGTTTTGATTCTGTACCGCTTTGGGGGCTCATCACAATACAAGGAAAGAGGCCGGAGATGGAAGATACTGCTATAGCTTTACCAAAGTTTCTGAAAATCCCTTCCCATATTTTGACTGATGCGCCAGTTTCTCATGCCCTGAGTCAAACACTTACAGCCCATTTATATGGGGTTTATGATGGACATGGAGGCTCTCAGGTGAATTTCTATCTGTTTTTATTACATTCGGCTCTTGTTTTAGTTTCTAGTAACACAAGAACTGTTAAGTTGCCTGTATGTTTAGAGTTCATTACCTATTTGTTTGTCATTTATGCCTACGTACTAAGACCAACTGTTTTTTCCATAGCAGGTAGCTAATTATTGTCATGAGCGTCTCCATATGGTTTTAGCACAGGAGATAGATATCATGAAAGAGGATCCACATAATGGAAGTGTTAACTGGAAGGAGCAATGGTCAAAGGCTTTCTTGAATTGTTTCTGTAGAGTCGATGATGAGGTAGGGGGGTTCTGTAGTGAAACAGACGGGATTGAGCCTGACCTTTCAGTCATTGCTCCTGAAGCAGTTGGATCTACAGCTATAGTTGCTGTTGTTAGTCCAAGCCATATTATTGTTGCGAATTGTGGTGATTCTAGGGCAGTCCTTTGTCGGGGAAAACTGCCCATGCCATTAACCATTGACCATAAGGTAAGGCTAGTGTTTGTTGTTGCACCGCTCTGCAACATCTGCTAGTAATTTCTTTTTGCAACCATATAATATTCGTTGTTAATTGTTTCCAGCCAAATAGGGAAGATGAGTGTTCACGAATAGAAGAACTGGGAGGGAAGGTCATTAATTGGGATGGACATCGCGTTTCTGGTGTTCTTGCAGTTTCAAGGTCAATTGGTATGTATATTGTACTAGCCGCCTGCAAATTTTGTTGTATTGTTGTATTTTTACTGGAGAGGGTTAAGAGCGTCATCTATATTGTGCTTGATTTGCACATGGAAATAAACGAATCTCAAAGCTACGATGGAGCAGACCTGCACGTGTACCAAACTTGAAGTGTTATACCATACATATATAGTGTCAAAGGTCAACCCTGAAGCAGCCCACTGATGTTGGATAACGACGTCTAACTTCAGTTGACATGGTTGTCATTTATTATTTGGAAACTGCTATTCTAGAGATGAAAGCTTTCTTGATTTGACGAGGTTGTCATTTTACTGCAGGTGATCGATATTTAAGGCCTTATGTGATTCCAGATCCAGAAATGATGTTTGTACCCCGAGCAAAAGAAGACGACTGTCTAATTTTAGCAAGTGATGGGCTATGGGATGTCTTGACAAATGAAGAAGCTTGTGATGTAGCACGGAGACGAATTCTTCTCTGGCACAAAAAAAATGGTGGTACTTTGAGTAGGGAAAGGGGTGAAAACGTAGATCCTGCTGCTCAAGATGCTGCAGAGTACTTGACTCGAGTTGCTCTCCAAAGGGGCAGCAGAGATAATATATCTGTGATTGTGGTCGATTTGAAGGCACAGAGGAAATTCAAGAAGAAAACATAACGCACTAAACCATCCTCGTATTTCATTTGTGGATGTAACATTGGGAAGTTATCCTACAGGATGATAATCATTGCAGATTTTAGCTATCCTTTTTAATTAGGCTGTTACCGTACATGATAGAAGTTATTCTGACAATAAAAATTCAGCAGAGTTGGTTCAAAGAACAAAGTATTGACTCCCAGCACAGATTATTTATGCAACTGTAGTGTAATGTTGTCTTCCCAGAACTCTCTCACTGAACAAACAACTGCACAAGTAGAAACAAGTTATGTGAGTGAGCTTGCTGTTTTTCATATATGTATCTATCCTTTTCTTGAGGTCTAAT

Download sequence region

Download sequence (3.2Kb)

Get flanking sequences on SL2.50ch07

mRNA Solyc07g040990.2.1

Ontology terms

terms associated with this mRNA

GO:0005515 – protein binding

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc07g040990.2.1 Protein phosphatase 2C (AHRD V1 ***- A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C
ATGCAAGATTGTTTTGAAACGGGAAAATTGATATATGATGAATCAGTATTACCTACATGTATTGACTTTGCTGGATATGAGCTGATCCCCAATACAACTAGCTTGCTGTCAGAACCTAACAAGTGCAAACTTCCTTGTTCGGTGTCGAATCATAGAGTGTCCAGGGACAAAGCTAACCTTTTTATGACAGTTGCTGATTGTCATGAAATCAGGATAGGGAAGAGTTTTTCTTCGACAGTTGTAGGTAATGGGAATTGTTTGATTGCTAGTGAGGTAGAAGATGGTAGATCTATGGACAACAATTTGATTTCACCAACTGATGAGCTTTTAGGAAATATGACTTGTTCTGATTCTCTAGTTGATGAGCGTGTCAGCATGCCTAACCAAGAATGTACAGGTTTGGAGGTTAAGGTTGGGAAAATGCCTCCTCGGGATGAGGAAAAGAAGGTTGGTGTATCCCAGATTCTGAGAAAGTCTTTTTCGTGTAGTTTGGCTAATGAGTTGGTTAATGAGTCACAACTTGTAAGTGATATTGTTTCCACCATGGTTGTGGGTGCTGAAGATTATAAAAGAAAATTATCACCATCCCATCTTGAGACCTCACAAGAGATAAAGATAAGCAGGCCAAATACCCTTTGTTTTGATTCTGTACCGCTTTGGGGGCTCATCACAATACAAGGAAAGAGGCCGGAGATGGAAGATACTGCTATAGCTTTACCAAAGTTTCTGAAAATCCCTTCCCATATTTTGACTGATGCGCCAGTTTCTCATGCCCTGAGTCAAACACTTACAGCCCATTTATATGGGGTTTATGATGGACATGGAGGCTCTCAGGTAGCTAATTATTGTCATGAGCGTCTCCATATGGTTTTAGCACAGGAGATAGATATCATGAAAGAGGATCCACATAATGGAAGTGTTAACTGGAAGGAGCAATGGTCAAAGGCTTTCTTGAATTGTTTCTGTAGAGTCGATGATGAGGTAGGGGGGTTCTGTAGTGAAACAGACGGGATTGAGCCTGACCTTTCAGTCATTGCTCCTGAAGCAGTTGGATCTACAGCTATAGTTGCTGTTGTTAGTCCAAGCCATATTATTGTTGCGAATTGTGGTGATTCTAGGGCAGTCCTTTGTCGGGGAAAACTGCCCATGCCATTAACCATTGACCATAAGCCAAATAGGGAAGATGAGTGTTCACGAATAGAAGAACTGGGAGGGAAGGTCATTAATTGGGATGGACATCGCGTTTCTGGTGTTCTTGCAGTTTCAAGGTCAATTGGTGATCGATATTTAAGGCCTTATGTGATTCCAGATCCAGAAATGATGTTTGTACCCCGAGCAAAAGAAGACGACTGTCTAATTTTAGCAAGTGATGGGCTATGGGATGTCTTGACAAATGAAGAAGCTTGTGATGTAGCACGGAGACGAATTCTTCTCTGGCACAAAAAAAATGGTGGTACTTTGAGTAGGGAAAGGGGTGAAAACGTAGATCCTGCTGCTCAAGATGCTGCAGAGTACTTGACTCGAGTTGCTCTCCAAAGGGGCAGCAGAGATAATATATCTGTGATTGTGGTCGATTTGAAGGCACAGAGGAAATTCAAGAAGAAAACATAACGCACTAAACCATCCTCGTATTTCATTTGTGGATGTAACATTGGGAAGTTATCCTACAGGATGATAATCATTGCAGATTTTAGCTATCCTTTTTAATTAGGCTGTTACCGTACATGATAGAAGTTATTCTGACAATAAAAATTCAGCAGAGTTGGTTCAAAGAACAAAGTATTGACTCCCAGCACAGATTATTTATGCAACTGTAGTGTAATGTTGTCTTCCCAGAACTCTCTCACTGAACAAACAACTGCACAAGTAGAAACAAGTTATGTGAGTGAGCTTGCTGTTTTTCATATATGTATCTATCCTTTTCTTGAGGTCTAAT

Download sequence (1.9Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc07g040990.2.1	SL2.50ch07:51485206..51488108	537	+	n/a

Add items to a list:

Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc07g040990.2	SL2.50ch07:51485207..51488433	3,227	+	n/a

Add items to a list:

Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc07g040990.2.1.1	SL2.50ch07:51485207..51485227	21	+	n/a
exon	exon:Solyc07g040990.2.1.2	SL2.50ch07:51485950..51486762	813	+	n/a
exon	exon:Solyc07g040990.2.1.3	SL2.50ch07:51486914..51487249	336	+	n/a
exon	exon:Solyc07g040990.2.1.4	SL2.50ch07:51487342..51487447	106	+	n/a
exon	exon:Solyc07g040990.2.1.5	SL2.50ch07:51487774..51488433	660	+	2
intron	intron:Solyc07g040990.2.1.1	SL2.50ch07:51485228..51485949	n/a	+	n/a
intron	intron:Solyc07g040990.2.1.2	SL2.50ch07:51486763..51486913	n/a	+	n/a
intron	intron:Solyc07g040990.2.1.3	SL2.50ch07:51487250..51487341	n/a	+	n/a
intron	intron:Solyc07g040990.2.1.4	SL2.50ch07:51487448..51487773	n/a	+	n/a

Add items to a list:

Related views

Genetic loci

Tomato locus Solyc07g040990

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17876199%2Fdetails feature 17876199

User comments

Please wait, checking for comments. (If comments do not show up, access them here)

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: