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Solanum lycopersicum mRNA Solyc06g048960.2.1

mRNA details  
Name Type Length
4,437
Organism
Description
Ribonuclease 3-like protein 3 (AHRD V1 *-** RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III
Location(s)
SL2.50ch06:32061372..32073856
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006396
  • GO:0006508
  • GO:0008026
  • GO:0006096
  • GO:0005524
Length
12485
Nb exon
23
Sifter term
  • GO:0005515
  • GO:0004540
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc06g048960.2.1 Ribonuclease 3-like protein 3 (AHRD V1 *-** RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III

CTTCACTAATGAACACTCAAAAGCTGCTGGCAAACATCCTCTTCAAAGTTCTTGCAATTCAACTCTAGCCAATAAAAACCAATGGAGCCAACTGATGTTGCAGTCTCTGAAAACCAACAGCTCTCCGCTGACCCTCTGCCTTTTGCTAGAAGGTTGTTATCAGTTGGAAGCCCTAGAGACTGCATTAAAGCAGAACACAATTGTTTACTTGGAGACTGGTTCTGGAAAGACCTTGATTGCAATTATGCTTCTTAGAAGCTATGCTTACCTTCTTCGAAAGCCATCTCCGTACATAGCTGTTTTCTTGGTCCCGACTGTTGTTCTAGTGACTCAGCAAGGAGATTCTCTCATGATGCATACAGACTTAAAAGTGGGCAAGTATTGGGGAGAAATGGGTGTTGATTATTGGGATGCTGCTACATGGCAACGCCAAGTGGACGCCCATGAGGTACTGGTTATGACTCCAGCAATACTACTTGCTGCTTTGAGGCATAGCTTTATACAAATAAACATGATTAAAGTTATAATATTTGATGAGTGCCATAATGCACGAGGCAAACACCCCTATGCCAGCATAATGATGGAATTTTATCATCGCCAGTTAACCCGTCAGAGCTTACAACTTCCAAGAGTATTTGGGATGACTGCTTCCCCTATAAAGTCTAAAGGTTCTAGCACAGCAGATAGTTATTGGCAAAAGATTCGTGATCTTGAGAATCTTATGAATTCCAAGGTATACACGTGTGGCAGTGAATCTGTTCTGGCGGAGTATATCCCATTCTCTAATCCGAAGTTGAAGATATACAAACATGTGGATATTCCTTGCACATTGTTTCTTAGTTTAGCTCATGACCTGGAACAGTTGAAAGAAATGCATGATTGTTCAATTTCAAAGTCAAACCTGTCTTTTATGAGTGCTGGAACTGCAAGAAGACGTTTGTCAAAACTTTATTCGGCTTTCTTATTTTGTTTGAGTGAGATGGGTGCTTGGCTGGCTTTCAAGGCTACTGAGTTCTTGTCCCGTGAAGAAGTTGATTTCCTTTCATGGGGAGAATTAGATGTATGTGCTCAAACTATTGTTAGAGATTTCAGTTGGGGTGCATCTAAGATTTTTTCGGCTCGCTTACCTTCAGGGCCATATTGGTCAATTGGTGGTGATATTCAGGCAAATGTGGATGCTGGATATTTGTCATCCAAAGTTACTTGTCTTCTAGAGTCTCTTCTTGAGTACAGGGACCAGAAGGATTTGAGATGCATCATATTTGTTGAGAGAATTATTACAGCCATTGTTCTTCGGTCTCTATTGAATGAGTTGCTTCCGGAACTATGTGGTTGGAGAACTGAGTACACTGCAGGACATATTTCTGTGGTCCAGTCACAGAGTAGGAAATTACAAAACAAAATTGTTGAAGAATTTCGCAAGGGGTTGGTGAACATTATTGTAGCAACATCTATTCTTGAAGAGGGCTTGGATGTTCAAAGTTGCAACCTTGTCATTCGATTTGATCCCTCAGCTACTGTTTGTAGCTTTATACAGTCACGTGGACGAGCTCGAATGCAAAACTCTGACTTTCTTCTGATGGTCAGAAGTGGGGATGATTCGACCCTCACTCGCATGCACAACTATATGGCTAGTGGAGAGATAATGCGACAAGAATCATTATGTCATGCTTCTATTCCATGTTCACCTCTAGATGATGAATTGTATGATGAGCCTTGCTACAAAGTTGAAAGCACAGGAGCAATTGTCACCCTCAGTTCTAGCGTGTCATTGTTATACTTATATTGCTCAAGGCTACCATCGGATGGGTACTTTAAACCCAATCCTAGGTGTGTGATTGATAAGGAAACAGGAACCTGCACGCTGCAACTTCCCAAAAGTTGCCCTTTGCAAAGAATTATTAGTGTACAGGGGAATAGCAAAATATCAAAGCAACTTGCATGCCTGGAGGCTTGTAAAGAACTTCATCGTGTGGGTGCCTTGACTGACAATCTTGTTCCTGATATCATGGAAGAAGAAACCATCAACAAAGAATTGGAATGTCAAATCCATACTGTTGAAGAATTAAAATACTTTCCACCAGAATTGGTTAGTCATTGCGGCAATGATTCAGAAGCAGTGTACTACTGCTACCTAGTTGAGTTGCAACATGACGCTTGCAACGATTTCCAGCTTCATGGAATTATACTTGCTGTTAGGACAAGGCTTAAGTTTGATGATGAAATAATGGCATTTGACTTGGACATAGATAGGAGGGGACGCTTACAAGTTCAACTTAATTATCACAACGTTGTTACACTTACTTCTGAAGAGATTCAACGGTGTCGGAGGTTTCAATCCAGCATCTTCAGAATTCTTCTTGACCGTGATCTGAGTAAACTGCAGGGCGCTTTGGCTGCAGTTCAATCGCCTATTGGTTCTGCAGTTTCTGATTATCTTTTGCTCCCATCTTTGGGTACTACACCTGAAATAAATTGGAAATGTGTGAATTCTTTACTGTTTCCATCTCAAGCTCTTGAGGCTAAGCATATGGATTGCTGTTCTACACAAGGTCGCAAACGCAGTGTTAGCACCAAAACTGGGGTGATATGTAGCTGCATGTTGGAGAACTCATTGGTCTTTACTCCTCATAATGGCCATATATACTGCATTACTGGTTTTTTGGATAATTTGGATTGCAACTCATTGTTGGATACGAGAACTGGAGAACCCATTACCTACATAGAATACTACAAAAAGCGACATGGGATTAACATATGCTTTGAAGAAGAACCGCTTCTTAGGGGAAAACATATTTGTAAGGTGCACAATTACCTTCAAAGATGCAGAATACAGAAGGCTAAAGATTCAACTGATTCATCTGTGGAGTTGCCTCCTGAACTTTGTTCCCTCATCATGTCACCCGTCTCTATTTCTACCCTTAATACCTATTCATATGTTCCTTCGATCATGCATCGGATTGAGTCCTTGGTTATGGCCTTAAACTTGAAAAGAATGCATTTGGATCACTGCACACTAGATATTTTTATTCCGACCATTAAGGTTTTGGAAGCAGTGACAACGAAGAAATGCCTCGAGAAGTTTCATCTGGAGTCACTTGAGACACTTGGAGACTCTTTTCTCAAATATGCTTCCAGTATACAGCTATTTAAGACTTACGAAAATCATCATGAGGGTCTTCTCACCATTAAGAAAAACAAAATCATTTCCAATGATGCACTATGTAGGCTTGGATGTGCTCGTAAAATACCGGGATTTATCCGTAATGAACCATTTGATCTTAAAGCATGGCTCATTCCTGGTGATAATTCTCAAATTCAAACCTTCGACGAAGAGTTCCTAACTTCTTCTGATAAAATGTATAGTAGAGGAAAACAGAAGTTTAGAAGTAAGAGAGTAGCTGATGTTGTTGAGGCACTAATTGGTGCCTACCTCAGCTCAGGTGGGGAAGTAGCGGCTTTATCATTTATGAAATGGCTTGGGGTGGACATCGATTTTGTTGATGCACCTTTGCCAAGGAACTTTCCCATGAATGCTGAGAAGCTAATCAATGTCAGATACTTGGAATCCCTGCTACATTACAAGTTCAATGATCCTTCTCTGCTTGTTGAAGCGCTGACTCACGGATCTTACATGCTACCTGAGATTCCACGATGCTATCAGCGCTTGGAATTTCTTGGAGATGCAGTGCTAGATTATGTTGTTACAGCACATCTCTATTTCAAGTATCCAGGACTGACTCCAGGACTAATTACTGATTTGAGGTCTGCCTCCGTAAACAATGAGTGTTATGCTCAGTCTGCAGTTAAGGCTGGCCTGCACAAGCACATTCTTCATGCCTCGCAAGATCTGCAGAGGCAAATACTTAGTACTGTTGAGGATTTCGAAAAATTGGATCTTCTGTCCATGTTTGGATGGGAGGCTGAAACTACTTTCCCAAAGGTGCTTGGAGATGTTATTGAATCCCTTGGTGGTGCAATCTTTGTTGATTCGGGCTTCAACAAAGACATTACATTTCAGAGCATACGACCTCTTTTGGAACCGTTGGTTACTCCTCAGACAGTAAAGCTCCAACCAGTAAGAGAGTTAAGTGAACTATGTGACCAGAAAGGTTATATAAAGAAGAAGGACGTCATCTCTCGTGAGAATGGTTTAGCATATATTACAGTAGAGGTTGAAGCAAATGGTGTTATTCACAAGAGCACGTGCTCGGGACGAGACAAAATAATGGCCAAGAAGGTGGCTAGCAAAAATGTCCTCAAGTCTCTGAAAGAATGTCCTTCCAATGCTTAGGAGTTGTTACTTTTCTGCTACTTCAGTTAACGAAATTCCTACAAATCCTTAATATTTTAAGGATCATTTTTGTTGTTTGATTGCTTCTCTTATTAGAACTGTTTGGATGTGCCTTCCATTGTATTTTGGTTGCTATTTCAATT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc06g048960.2.1SL2.50ch06:32061514..320728231,400-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc06g048960.2SL2.50ch06:32061372..3207385612,485-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc06g048960.2.1.1SL2.50ch06:32073786..3207385671-n/a
exonexon:Solyc06g048960.2.1.10SL2.50ch06:32069041..32069170130-2
exonexon:Solyc06g048960.2.1.11SL2.50ch06:32068832..32068931100-1
exonexon:Solyc06g048960.2.1.12SL2.50ch06:32067757..32067952196-n/a
exonexon:Solyc06g048960.2.1.13SL2.50ch06:32067517..32067677161-1
exonexon:Solyc06g048960.2.1.14SL2.50ch06:32067037..32067255219-1
exonexon:Solyc06g048960.2.1.15SL2.50ch06:32066704..32066933230-2
exonexon:Solyc06g048960.2.1.16SL2.50ch06:32066358..32066632275-n/a
exonexon:Solyc06g048960.2.1.17SL2.50ch06:32065845..32066272428-1
exonexon:Solyc06g048960.2.1.18SL2.50ch06:32065655..32065758104-2
exonexon:Solyc06g048960.2.1.19SL2.50ch06:32065388..32065584197-n/a
exonexon:Solyc06g048960.2.1.2SL2.50ch06:32072762..3207284685-1
exonexon:Solyc06g048960.2.1.20SL2.50ch06:32065060..32065269210-n/a
exonexon:Solyc06g048960.2.1.21SL2.50ch06:32063980..32064390411-n/a
exonexon:Solyc06g048960.2.1.22SL2.50ch06:32062078..32062356279-n/a
exonexon:Solyc06g048960.2.1.23SL2.50ch06:32061372..32061865494-n/a
exonexon:Solyc06g048960.2.1.3SL2.50ch06:32072477..32072654178-n/a
exonexon:Solyc06g048960.2.1.4SL2.50ch06:32072123..32072236114-n/a
exonexon:Solyc06g048960.2.1.5SL2.50ch06:32071246..32071380135-n/a
exonexon:Solyc06g048960.2.1.6SL2.50ch06:32070257..3207034185-2
exonexon:Solyc06g048960.2.1.7SL2.50ch06:32070074..3207013865-n/a
exonexon:Solyc06g048960.2.1.8SL2.50ch06:32069693..32069833141-n/a
exonexon:Solyc06g048960.2.1.9SL2.50ch06:32069261..32069389129-n/a
intronintron:Solyc06g048960.2.1.10SL2.50ch06:32069171..32069260n/a-n/a
intronintron:Solyc06g048960.2.1.11SL2.50ch06:32068932..32069040n/a-n/a
intronintron:Solyc06g048960.2.1.12SL2.50ch06:32067953..32068831n/a-n/a
intronintron:Solyc06g048960.2.1.13SL2.50ch06:32067678..32067756n/a-n/a
intronintron:Solyc06g048960.2.1.14SL2.50ch06:32067256..32067516n/a-n/a
intronintron:Solyc06g048960.2.1.15SL2.50ch06:32066934..32067036n/a-n/a
intronintron:Solyc06g048960.2.1.16SL2.50ch06:32066633..32066703n/a-n/a
intronintron:Solyc06g048960.2.1.17SL2.50ch06:32066273..32066357n/a-n/a
intronintron:Solyc06g048960.2.1.18SL2.50ch06:32065759..32065844n/a-n/a
intronintron:Solyc06g048960.2.1.19SL2.50ch06:32065585..32065654n/a-n/a
intronintron:Solyc06g048960.2.1.2SL2.50ch06:32072847..32073785n/a-n/a
intronintron:Solyc06g048960.2.1.20SL2.50ch06:32065270..32065387n/a-n/a
intronintron:Solyc06g048960.2.1.21SL2.50ch06:32064391..32065059n/a-n/a
intronintron:Solyc06g048960.2.1.22SL2.50ch06:32062357..32063979n/a-n/a
intronintron:Solyc06g048960.2.1.23SL2.50ch06:32061866..32062077n/a-n/a
intronintron:Solyc06g048960.2.1.3SL2.50ch06:32072655..32072761n/a-n/a
intronintron:Solyc06g048960.2.1.4SL2.50ch06:32072237..32072476n/a-n/a
intronintron:Solyc06g048960.2.1.5SL2.50ch06:32071381..32072122n/a-n/a
intronintron:Solyc06g048960.2.1.6SL2.50ch06:32070342..32071245n/a-n/a
intronintron:Solyc06g048960.2.1.7SL2.50ch06:32070139..32070256n/a-n/a
intronintron:Solyc06g048960.2.1.8SL2.50ch06:32069834..32070073n/a-n/a
intronintron:Solyc06g048960.2.1.9SL2.50ch06:32069390..32069692n/a-n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17843791%2Fdetails feature 17843791
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