Sol Genomics Network

Solanum lycopersicum gene Solyc05g008060.2

Name Solyc05g008060.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc05g008060	Length 3,440

Description

Auxin efflux carrier (AHRD V1 **** D6RT10_SOLLC); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup

Location(s)

SL2.50ch05:2482150..2485589

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3440

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc05g008060.2.1	SL2.50ch05:2482150..2485589	2,433	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc05g008060.2 SL2.50ch05:2482150..2485589
CATGTAATTTCACTCCTTTTTCTTCTTTCCTCTTCCACCAAAGAAAAGAAAAACAAAACAATTAAATTTTCTCATCAGTCCTTTTTAATCTCTCTCTGCAATTTGCTGCAGAATTCTTCTGCACCAGTACTGCAGTATCAACTGCAATACACACAGTGCTGCCTGCAGTTAAATAACGGTTTTTTCTTCTTCTTCGATTTGACAATTTTCTTCTCTTTTTTTGGCGAAAATGATCACTTGGCACGATCTGTATGTTGTGTTAACGGCAGTTGTTCCTCTGTATGTTGCTATGATATTAGCTTATGGTTCTGTTCGTTGGTGGAAGATCTTTTCTCCCGATCAATGTTCAGGGATCAACAGATTCGTAGCTATTTTTGCAGTTCCTTTGTTGTCTTTCCATTTCATAGCTATGAACAATCCATATGAGATGAATTTCCGTTTCATTGCGGCGGATTCGCTGCAGAAAGTGATTATGCTTGTTGTACTTTCATTATGGGCTAATTTAACTAAAAATGGTAGCCTTGAATGGAGTATTACCATTTTTTCACTTTCAACACTACCAAATACATTGGTGATGGGTATTCCTTTGTTAATTGCTATGTATGGTGAGTACTCTGGTAGTCTCATGGTACAAGTAGTGGTGTTGCAGTGTATCATTTGGTACACACTTTTGCTTTTTTTGTTCGAATATCGCGGTGCGAAAATGCTTATAATGGAGCAATTCCCAGAAACTGCTGCTTCCATTGTTTCGTTTAAAGTTGAATCTGATGTTGTATCTCTAGATGGACATGATTTTCTCGAAACAGATGCTGAAATTGGTCAAGATGGAAAACTGCATGTTACTGTGAGAAAATCGAATGCGTCCCGGAGATCGTTCGCTATGGATCATCGGCCGTCGAATCTCACCGGAGCTGAGATTTACAGTCTCAGTTCTTCGAGAAATCCGACTCCTCGAGGGTCTAATTTTAATCATAATGATTTTTACTCAATGATGGGATTTCCTGGAGGAAGATTATCCAATTTTGGTCCTGCAGATATGTATTCTGTACAATCGTCTCGGGGTCCGACCCCGAGACCATCTAATTTCGAAGAAAACTGTGCTCCGGGAGGTCTAGTTCAGAGTTCCCCGAGGTTCGGATACTTTCCGACGCAGCAGCCTGCGCCGGGATCTTATCCTGCCCCGAACCCCGAAATTGCATCCGCAGGGCCTAAAAGCACAAAACCTCAGCAGCCAAATGTACAAACGCAGAAGCAGGAAGTACAACAGCAACAGCAGCAGCACCAACAGCCAAATGCTAAAGCTAATAATCATGATGCTAAGGAACTTCACATGTTTGTATGGAGTTCGAGTAATTCTCCGGTGTCGGAGGCCGGTGGCCTCCATGTGTTCGGTGGCAATGATTTCAGTGCCAACGAACAATCGGGTCGATCCGATGGAGCTAAAGAAATTCGAATGTTGGTTTCTGATCATACTCAAAATGGAGATAGTAAAGGTACAACTTTTTTTATTTTTTACTAATTAACTCGGAATATACACTATTTAAATATATTTATTTTTAAAAAAAAGTAAATTCGCCAGACAAGGTGTCTTAATATTATTTTAATATATATTTAAATAATTTCATATTTGAAGCCATTCCGCAAATAGGGGAATTTGGTGGTGAGGATTTCACTTTTGGAGGTGCCAATGGTGGTGGAAAAGATGGCGATGAAGAAAAAGGCGAAAAAGAGGGACCCACTGGACTGACTAAACTAGGGTCTAGCTCTACATCGGAGCTACACCCCAAGCTCGCTGGAGTACAAGATGCTGGTATGGGAAAACAGATGCCTCCGGCTAGTGTTATGACTCGTTTGATCTTAATCATGGTTTGGCGTAAGCTTATTCGTAACCCAAACACGTATTCAAGCCTCATTGGTCTGATTTGGTCTCTAATCTCATTCAGGTAAGCTAATTATTATGGATTTAAAAAACTAATTACTTTCTTAACTTTCTCATACATTTTTAGTTGATTAGTGGGTAAATTTTTAAAATTTGTCCATCAATTAATTAGTTCTTTTGTTTGTTTTTTAGATGGCATGTGCATATGCCCAAAATTATAGAGAAGTCAATCTCCATTCTCTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTGGGTAAGTAAATCGTATCGAGTTTTAAATATATTATTCTTATCATTAATAATTTTATCGAACTTGTAAATAAAATTATAGTTACGTGATACGAATTTTTGAAGCTAGTATTGTCAAACATAGCATTTATATTTTTCAACTATTTATTGTACCTTGCTTTCTCTTTCATATGTTAAACCATTTCTAGTACGTTAAGTTTTACAATTTTGACCATCAAAACCCAATGGTAGTATTAATAGGGTAGTTATATTATCAAACTCATAGTCATCGTGGGGTCCTTACTTGACTTAATCATTGGTTTGGTTACTAGTAGTTGAAATTTAATATAAGAAGTTTCAACAGCTATCTAAATACATCAGAGATGGATTCAGAATCTTAATTAATCTGTGGATCAAAAAAGTACAAGATTTAAACTTATATTATTTCATTTGTATAGTTAAAAGTAACGAATTCAGTTAAATTTACGAGTCACGATTATGCGTAGGTTTGTTTATGGCTCTTCAACCAAAAATCATTGCATGTGGTAACACAGTGGCTACATTTGCAATGGCTGTAAGGTTTCTAACTGGCCCAGCAGTTATGGCTGCTGCTTCAATTGCTGTTGGGCTACGTGGTACTCTTCTTCATGTAGCCATTGTACAGGTAAATTTTTTTTATCCATATAGCCTTTTTATTTTTAATATATAGTTTTTGGTGGTCATGAAATGACAAATTTATTATCTATTTTATTAAATGTTGCATTAAAATTGTTGGTTCAATTTTATTTTTTTTAAAAAAAATAATTTGGTATATTGAATTTTAGGCTGCATTGCCACAAGGGATTGTCCCATTTGTGTTTGCTAAGGAGTACAATGTTCATCCAGCTATTCTTAGTACTGCGTAAGTAAAATTATTTTTTGATATATTATAACAGGTTAAATTACATTACAACGTATATAATCGTGCAATAATTTATAAATTTTTTCTTCGTATTTCAGGGTTATTTTTGGGATGTTGATAGCGTTGCCAATTACATTAGTGTACTACATTATTCTTGGATTATAAGAATATATGCCAAGTGAAGAAAGGAGGAAAAAAATAGTGGGAATCATTAATGGTTTAATCAATTCATGGGATGAGAATTAATTAAAATTACTCATGAAAATTCCCAGATATTTGGAGCATTAGGACAAGAAATTTGACTTAAATTAGTTTTTGAAGCCTCCATTTGAAGAAAAAAAAAATATCAAAAATGTTGCAAAATTTAGAAAAAGAGGAGACAAGAAGGAGCAAAACATGGAAGCAAA

Download sequence region

Download sequence (3.4Kb)

Get flanking sequences on SL2.50ch05

mRNA Solyc05g008060.2.1

Ontology terms

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc05g008060.2.1 Auxin efflux carrier (AHRD V1 **** D6RT10_SOLLC); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup
CATGTAATTTCACTCCTTTTTCTTCTTTCCTCTTCCACCAAAGAAAAGAAAAACAAAACAATTAAATTTTCTCATCAGTCCTTTTTAATCTCTCTCTGCAATTTGCTGCAGAATTCTTCTGCACCAGTACTGCAGTATCAACTGCAATACACACAGTGCTGCCTGCAGTTAAATAACGGTTTTTTCTTCTTCTTCGATTTGACAATTTTCTTCTCTTTTTTTGGCGAAAATGATCACTTGGCACGATCTGTATGTTGTGTTAACGGCAGTTGTTCCTCTGTATGTTGCTATGATATTAGCTTATGGTTCTGTTCGTTGGTGGAAGATCTTTTCTCCCGATCAATGTTCAGGGATCAACAGATTCGTAGCTATTTTTGCAGTTCCTTTGTTGTCTTTCCATTTCATAGCTATGAACAATCCATATGAGATGAATTTCCGTTTCATTGCGGCGGATTCGCTGCAGAAAGTGATTATGCTTGTTGTACTTTCATTATGGGCTAATTTAACTAAAAATGGTAGCCTTGAATGGAGTATTACCATTTTTTCACTTTCAACACTACCAAATACATTGGTGATGGGTATTCCTTTGTTAATTGCTATGTATGGTGAGTACTCTGGTAGTCTCATGGTACAAGTAGTGGTGTTGCAGTGTATCATTTGGTACACACTTTTGCTTTTTTTGTTCGAATATCGCGGTGCGAAAATGCTTATAATGGAGCAATTCCCAGAAACTGCTGCTTCCATTGTTTCGTTTAAAGTTGAATCTGATGTTGTATCTCTAGATGGACATGATTTTCTCGAAACAGATGCTGAAATTGGTCAAGATGGAAAACTGCATGTTACTGTGAGAAAATCGAATGCGTCCCGGAGATCGTTCGCTATGGATCATCGGCCGTCGAATCTCACCGGAGCTGAGATTTACAGTCTCAGTTCTTCGAGAAATCCGACTCCTCGAGGGTCTAATTTTAATCATAATGATTTTTACTCAATGATGGGATTTCCTGGAGGAAGATTATCCAATTTTGGTCCTGCAGATATGTATTCTGTACAATCGTCTCGGGGTCCGACCCCGAGACCATCTAATTTCGAAGAAAACTGTGCTCCGGGAGGTCTAGTTCAGAGTTCCCCGAGGTTCGGATACTTTCCGACGCAGCAGCCTGCGCCGGGATCTTATCCTGCCCCGAACCCCGAAATTGCATCCGCAGGGCCTAAAAGCACAAAACCTCAGCAGCCAAATGTACAAACGCAGAAGCAGGAAGTACAACAGCAACAGCAGCAGCACCAACAGCCAAATGCTAAAGCTAATAATCATGATGCTAAGGAACTTCACATGTTTGTATGGAGTTCGAGTAATTCTCCGGTGTCGGAGGCCGGTGGCCTCCATGTGTTCGGTGGCAATGATTTCAGTGCCAACGAACAATCGGGTCGATCCGATGGAGCTAAAGAAATTCGAATGTTGGTTTCTGATCATACTCAAAATGGAGATAGTAAAGCCATTCCGCAAATAGGGGAATTTGGTGGTGAGGATTTCACTTTTGGAGGTGCCAATGGTGGTGGAAAAGATGGCGATGAAGAAAAAGGCGAAAAAGAGGGACCCACTGGACTGACTAAACTAGGGTCTAGCTCTACATCGGAGCTACACCCCAAGCTCGCTGGAGTACAAGATGCTGGTATGGGAAAACAGATGCCTCCGGCTAGTGTTATGACTCGTTTGATCTTAATCATGGTTTGGCGTAAGCTTATTCGTAACCCAAACACGTATTCAAGCCTCATTGGTCTGATTTGGTCTCTAATCTCATTCAGATGGCATGTGCATATGCCCAAAATTATAGAGAAGTCAATCTCCATTCTCTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTGGGTTTGTTTATGGCTCTTCAACCAAAAATCATTGCATGTGGTAACACAGTGGCTACATTTGCAATGGCTGTAAGGTTTCTAACTGGCCCAGCAGTTATGGCTGCTGCTTCAATTGCTGTTGGGCTACGTGGTACTCTTCTTCATGTAGCCATTGTACAGGCTGCATTGCCACAAGGGATTGTCCCATTTGTGTTTGCTAAGGAGTACAATGTTCATCCAGCTATTCTTAGTACTGCGGTTATTTTTGGGATGTTGATAGCGTTGCCAATTACATTAGTGTACTACATTATTCTTGGATTATAAGAATATATGCCAAGTGAAGAAAGGAGGAAAAAAATAGTGGGAATCATTAATGGTTTAATCAATTCATGGGATGAGAATTAATTAAAATTACTCATGAAAATTCCCAGATATTTGGAGCATTAGGACAAGAAATTTGACTTAAATTAGTTTTTGAAGCCTCCATTTGAAGAAAAAAAAAATATCAAAAATGTTGCAAAATTTAGAAAAAGAGGAGACAAGAAGGAGCAAAACATGGAAGCAAA

Download sequence (2.4Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc05g008060.2.1	SL2.50ch05:2482378..2485347	654	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc05g008060.2	SL2.50ch05:2482150..2485589	3,440	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc05g008060.2.1.1	SL2.50ch05:2482150..2483642	1,493	+	n/a
exon	exon:Solyc05g008060.2.1.2	SL2.50ch05:2483783..2484092	310	+	n/a
exon	exon:Solyc05g008060.2.1.3	SL2.50ch05:2484221..2484306	86	+	2
exon	exon:Solyc05g008060.2.1.4	SL2.50ch05:2484788..2484945	158	+	1
exon	exon:Solyc05g008060.2.1.5	SL2.50ch05:2485106..2485182	77	+	2
exon	exon:Solyc05g008060.2.1.6	SL2.50ch05:2485281..2485589	309	+	n/a
intron	intron:Solyc05g008060.2.1.1	SL2.50ch05:2483643..2483782	n/a	+	n/a
intron	intron:Solyc05g008060.2.1.2	SL2.50ch05:2484093..2484220	n/a	+	n/a
intron	intron:Solyc05g008060.2.1.3	SL2.50ch05:2484307..2484787	n/a	+	n/a
intron	intron:Solyc05g008060.2.1.4	SL2.50ch05:2484946..2485105	n/a	+	n/a
intron	intron:Solyc05g008060.2.1.5	SL2.50ch05:2485183..2485280	n/a	+	n/a

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Related views

Genetic loci

Tomato locus SlPIN4

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17815376%2Fdetails feature 17815376

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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