Sol Genomics Network

Solanum lycopersicum gene Solyc01g106080.2

Name Solyc01g106080.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc01g106080	Length 5,871

Description

Methylmalonate-semialdehyde dehydrogenase (AHRD V1 **** D3BUA7_POLPA); contains Interpro domain(s) IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR015590 Aldehyde dehydrogenase

Location(s)

SL2.50ch01:94064519..94070389

GFF source

ITAG_eugene

From BOGAS: 1

Length: 5871

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc01g106080.2.1	SL2.50ch01:94064519..94070389	1,855	-	n/a

Add items to a list:

Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc01g106080.2 SL2.50ch01:94070389..94064519 (sequence from reverse strand)
TATGGAAGATGAAATAAAATTTAGGTCTTTTAATATTATCATGATACTCAAACATTTAATGTGGCTAATCTGCCAAAAAGCCAAATATTATTTATTTCCAAAAAATAGGACTCCATATCACTGATCTGATCTTCATAATCAATTAGATAATCTCTAAAACACTATCTTTCTTGAATATATATATAGATTTGGAATTTTGAATACACCATTTTTTTTTAACAAAATATTTGGAGAGAAACAATGATGCAGTTTTCAGTTCACAGAGGTGAAATTTCGCCTAATTTAAACCATATATTTTTGTTCTTATTAATCTTGTTCATAGAGGTTTCGCCTAATTTGCACCATATTGATCTTTTATTTTTTGTGAATGGATAATAATCCATAAATCTTTTGTTTGTTGCAGTGAAGAAACTAAGGTCTTTGACTCCTGGTATTTTTGCTGTCGCTAATCATCACTTTTCAGTTGCTACGGAATCCTCATGGAAGCATCGAACTTCCCTCGTCAGTATTTATTTACTCCATGTTTTAGTTTATTCCATCAATTACTCTTGATTTTTTATGTTAATGGATGGTTTAGTGGAATGATGTTTTCTTTCTTATACTTTCTGTTCGCTGTTCAATCAATGAGACAGCTTTAAATCTCTCTGAAATTTTTCTTGTGAAGTAGTGTTTAATTAGGGTTAAAAACTTTCTTGATCTTCTTTTTATCAGAGAGTTCCAAATTTAATTGGTGGCAGCTTTGTAGATTCACAATCATCAGAATTCGTTGATGTGATAAACCCAGTAAGTTTATCTGTTAAAGTTGCAATCTTTTACCTGGAATGCTAATACTTGGGGAAATTTATAATTGCTTGAGTTTTGATCATAGGCAACCCAAGAGGTGGTTTCTCAGATACCTTTAACAACGGATAAAGAATTCAAATCTGCGGTTTCTGCAGCCAAGGAGGCTTTTCCGTCATGGAAAAACACACCCATAACCACAAGACAACGGGTCATGCTCAAATTCCAAGAGCTTATTAGGAAGAACATGGTTTGTTTTTGTCGGATTACCGTATCTTTCTGCAGTTCTTTGCTTGTGATCTCTGTTCTCTTAATTTATCCTGTGTCTGTTCTAGGATAAGCTTGCCTTCAATGTGACTACGGAGCAGGGAAAAACACTGAAAGATGCACAAGGGGATGTGTTCCGCGGTCTTGGTTAGTTCTTCACTGACTTAGGCATAAGGAAACATCTTCTCTTTGATGGCTGTGAACTTGAATTTCTGTTTTTCTGTTTTGTGTAGAGGTGGTGGAGCATGCGTGTGGAATGGCAACTTTGCAGATGGGTGAGTATGGGTCTAATGTATCAAATGGAATTGATACCTATAGCCTAAGGGAACCTCTGGGTGTTTGTGCCGGGATTTGTCCATTCAACTTCCCTGCAATGATTCCCTTGTGGGTAAGCATGTTCCTATTTTTTTTTCTCCTTACATAGTTTCCAAACATTTAAGTGCATTTCTTAAATTTCTTTACAGTTTTTGAACTTGGTTGTCTTATCCTTGACTTCTACCTTGCTCGAGGAATCACTTGTTTTCACGTAACAACTCGATGTGATCAAGAAAGCTTTTGAACTGTGATTAGAATGACACAATTGTTAGTCATTAGATGGCCAGCTTTATGGGCTGTTTTGTATCAACTACCTTTTCATGTATCGTTCTCCCTTTCCCCATGCATCTCTGTGGGTTTTTTTGGGTGGGGACATGGAATAGGTGTTAAGCTTAAGTTTCAGAAAATATGAGCATCTTTATATAGTTTACACGAATTTGGTGCAGATGTTTCCTGTTGCAGCTACTTGTGGCAACACCTTCATTCTTAAGCCTTCAGAGAAGGACCCAGGTAGCTGTTTCCATATTTTTCAATTATTATAGCATAAGATGTTGCAACATTTATGGGTAGAGGTTCATGTACCAGTTGTGTAAAGCATATAGTGTATATAACTTTAAAAAAAGAGCATCATTTATGCTGCCTTCTGCATTTGACTCATTTTGTTTAATCATTTGGTTTCAGGGGCTTCCATGATGTTGGCAGAGTTGGCAATGGAGGCTGGTTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGTATGTCTTTTCCTAGAATTGCTAGTGATGTGTTTTTCTGCCCTTTTATTTTAGTCCAATAATTATATGGGTTCTATCTGGCCTTCTTATTCTATATTTTAAACAGCACCAAAGGATTGAGTAAAACTATGTAGTGAATATCCATTTTATCCTGCTACATAGAAAAGTATATTGATGCTTCCTGGGAGGCATTTTCTTTGCCACGTCCTATCCATCCATACCCTTTTTATGAACATGGATTTATTGGAATTAGTAGTAGAGATATTTATATGGGTTTGACTGGCATAATTATGGATATTCATGATACCTCTGTCTTGCAGGATGTTGTTAATGCTATATGTGATGATGACGATATCAGAGCCGTATCATTTGTTGGCTCAAATCAAGTGAGTACTGTATTGATTTATTGACACCTTAAGCCACAATTATTAAGTACTTTTTGGATGGATGGGAGGAGGTGTATCTAGGTTGAGCATAGCTTGTCTTCTTTATACTCTCTCTAGTAATGATCTGCCACTACTATAATTTTCTGGTTTTAGTTAAATCTCTATCCGGAAAGGTGTTGCCACTGTTGTGAATGTTGCTGGACCTTACGAATGAAATTGTTAGTGATTTAGAAATTTAATTGCAGATAACCATCTCGGTATTTTGAGATAGTCTAGTATGAAGCATTGACAAGTTTTCCTTGAACTTGAATGCGCTATAGATAATTTGGGGGCATTTGTAGAGAACCTCATTTTTCTGTAGGTACTCTACTTTTGAATAGTACCTTGTATACCTTGAATTTTCCCAGCAATCCAATGAAATTATTATCTTATCAAAAGATAGGGAAAAGAAATCTAGGTTCTCCATATTTTGTCAATAAAGATTCTTTTAGTGGAATTTACATTTTCTTTTGCGCTAAAATAAATGACTAAATATTTTGGTAGTTGTCTCAATCTTAGTTTTCATGCTTTGTATGCGAGTGGTCAAGTATCTCCATTTGTCTTTGCCTCTTATAACTTTCACCCGTTTGCCATCAATAAGGTTTTGACACATCACAAAGGCAGGGTGGGTGGTGAAGCATATACTTAAGTTTAATACATCAATAAATGAACTCTTGGTTTCTTTTTCAAATGAAATCGGTTGTCGATAGATTTCTGATCCATTTTGAATCAGTTTGTTCTGCCTGTGGTATATTGACCATTCCTTGTTTTACTATTTCCCCTCAGGCTGGTATGCATATATATTCTAGAGCATCAGCTAAAGGAAAACGTGTTCAGGTCAGTGCAATATTACTAACTCTCCTCTCAACTGTATTTGCCAATGTGGCAAACATGTTTAACATCATTGTTAGTATTGAAGCTAAATACATAGCTGACCAACTGAAATGCCCTCAGTCCAATATGGGAGCCAAAAACCACGGGGTCGTCATGCCAGATGCAAACATAGATTCTACAGTAAATGCTTTAGTGGGGGCTGGTTTTGGTGCAGCAGGGCAAAGATGCATGGCATTGAGCACAGTGGTTTTTGTTGGTGACTCAAAACCTTGGTAACAGATTTACCTTATTATTACTCCACTTCACTGACGTCTTTTAGTTACAATTGACACCTTTGATGCATGACTACATTAAATCTTACAGGGAAGAAAAACTGTTGGAACGTGCAAAAACTCTGAAGGTCAATGCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGTGGGTACATGATTCAAGACTTGTACAAACAAGTTACTCAACAACTGCTGTTTTCAAATTTCCATGTTGATCATTCTGGACTGACCTTTTTCTGATACTACAGGCAAAAGAACGAGTATGTCGATTGGTTCAAAGTGGCGTTGATAGTGGAGCCAAATTATTGCTTGACGGAAGAGATATTGTGGTATCTAGTTATATCTGCTCATCTTTTAATTTTTGTTTCTGATAGCACCTAAGATGTTCTTTTTCATATAAATGCAAACTAAGGGGTGAGTTGATCAATGATAAAGATGTTCTAGGAAATGATGACACAAAGCTCAGAAGATGACTTTAAAATGTTTTTAAGTTAGTGGAATGAATATCTGAAACGCTATATATTTGACGTTTGTCGTAGACTCGGTATCCGTTTAATTTCAGTTATGTGTTGAAAAGGTATCTTGCCAATCAAACTGAGTGGAGGAGCTTGGCTATCAAACTGAGTTATGTTTGGCAAAATTGATCCCAGGCGAATGATGGCCGTGTGATGATGCAATTCCAGTGCCTTATATTCTGTTTGGCAGAATCGATTTTATTTCGGTTGCGCTACTATTAATTTACATGCATAAATTATGTCCAAATTCATAAGGTTAAGCAAGAGAAGGGCATTATACTATGTTCAAGAGATGATTGAGTACAGGGAACTAATTGCATAATTTCTTGCATCAAATAGCTACTCATTTATAAAACGAGCTGGAAAGTTTAATTTCTTTTACCCTGATGCCCAATAGGTCCCAGGATATGAAAAAGGCAATTTTGTTGGTCCCACAATCCTGTGTGGTGTCACTCCCGATATGGAATGTTACAAGGTAGTTGTCCTACATTCTCTAATTTCCCTCTTGATTTTCAGAACATGGCATAACCTACACATAATGTATATATGCTTTTTACAGGAGGAGATCTTTGGCCCAGTTCTTCTTTGCATGCAGGTTGGTTGTTAACCATTCCACCATGTAGCCTCACCTATACCTATCAAGTTATATACTAAACTAGAATTGTCATTTTGATATTCTCAGGCCAACAGCTTGGACGAGGCCATTAACATTGTTAACCAGAATATGTAATCCCCGTGCCCTGTTCTTTTTTCTTTCCTTCCCCAGCCTCAAACTCATTTTTCATGCAGTGTTTATGTCCTATACTAATATCCTTCTGCTTTTTCAGGTATGGTAATGGTGCTGCTATCTTTACCACATCTGGTGTAGCAGCGAGGAAGTTCCAAACAGAGATAGAGTCAGGCCAGGTATGAAATGCTGCTGCACGAACTTGTTAACATATGGAAAAAAAAAGAAGAAATGGTGCTAAATCCTCACTTAAAATTACGACTTCGTGGATGATATTCATTATGTGATATTTTGGGAACGCATGTCAAAAAATTTCTGTTTCCTGATTAAATTGTTGCTTCTTATTTCTGCTTCCTCTACAAGATTGGAATCAATGTTCCTATTCCAGTGCCATTGCCATTCTTCTCGTTTACTGGATCCAAGGCTTCCTTCGTTGGAGACCTCAATTTCTATGGTGAGGAACAATACTATACATTTTTTAGTCTTTAGGTAATGGTACTTGGTTTCCATTTGATTGTTTGGGATTTCATTGTAGGCAAGGCTGGAGTTCAGTTTTACACCCAAATCAAGACAGTTACACAGCAATGGAAGGACTTGTCAAGTGGTTCTGGCAACTCTCTAGCAATGCCAACTTCTCAGAAGTAATAAAAAACTTCAGAATAATACCCTCTTTAAAGTGCAATAAATTGCCCGTTTTGATCTTATACCCTGGTGTTACTTTTTTGTTACCAGATTTTATTTTCCCCCAGTATCCTATAATTATATTCTATCCTTCCACCACTTTTCATTGGTATCATAATTGAAACAAAAGATTCTCAATAATAAAACACAAGTTGATACTAGAATAAAAACTGAATTAAGCAAAATTTAGTTCCAAAAAGTGATGGGGAATATTGTTGTTGCACCAAAATGTTAAACGACATATGACAATAGGTAAT

Download sequence region

Download sequence (5.8Kb)

Get flanking sequences on SL2.50ch01

mRNA Solyc01g106080.2.1

Ontology terms

terms associated with this mRNA

GO:0004491 – methylmalonate-semialdehyde dehydrogenase (acylating) activity

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc01g106080.2.1 Methylmalonate-semialdehyde dehydrogenase (AHRD V1 **** D3BUA7_POLPA); contains Interpro domain(s) IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR015590 Aldehyde dehydrogenase
TATGGAAGATGAAATAAAATTTAGGTCTTTTAATATTATCATGATACTCAAACATTTAATGTGGCTAATCTGCCAAAAAGCCAAATATTATTTATTTCCAAAAAATAGGACTCCATATCACTGATCTGATCTTCATAATCAATTAGATAATCTCTAAAACACTATCTTTCTTGAATATATATATAGATTTGGAATTTTGAATACACCATTTTTTTTTAACAAAATATTTGGAGAGAAACAATGATGCAGTTTTCAGTTCACAGAGTGAAGAAACTAAGGTCTTTGACTCCTGGTATTTTTGCTGTCGCTAATCATCACTTTTCAGTTGCTACGGAATCCTCATGGAAGCATCGAACTTCCCTCAGAGTTCCAAATTTAATTGGTGGCAGCTTTGTAGATTCACAATCATCAGAATTCGTTGATGTGATAAACCCAGCAACCCAAGAGGTGGTTTCTCAGATACCTTTAACAACGGATAAAGAATTCAAATCTGCGGTTTCTGCAGCCAAGGAGGCTTTTCCGTCATGGAAAAACACACCCATAACCACAAGACAACGGGTCATGCTCAAATTCCAAGAGCTTATTAGGAAGAACATGGATAAGCTTGCCTTCAATGTGACTACGGAGCAGGGAAAAACACTGAAAGATGCACAAGGGGATGTGTTCCGCGGTCTTGAGGTGGTGGAGCATGCGTGTGGAATGGCAACTTTGCAGATGGGTGAGTATGGGTCTAATGTATCAAATGGAATTGATACCTATAGCCTAAGGGAACCTCTGGGTGTTTGTGCCGGGATTTGTCCATTCAACTTCCCTGCAATGATTCCCTTGTGGATGTTTCCTGTTGCAGCTACTTGTGGCAACACCTTCATTCTTAAGCCTTCAGAGAAGGACCCAGGGGCTTCCATGATGTTGGCAGAGTTGGCAATGGAGGCTGGTTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGATGTTGTTAATGCTATATGTGATGATGACGATATCAGAGCCGTATCATTTGTTGGCTCAAATCAAGCTGGTATGCATATATATTCTAGAGCATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGAGCCAAAAACCACGGGGTCGTCATGCCAGATGCAAACATAGATTCTACAGTAAATGCTTTAGTGGGGGCTGGTTTTGGTGCAGCAGGGCAAAGATGCATGGCATTGAGCACAGTGGTTTTTGTTGGTGACTCAAAACCTTGGGAAGAAAAACTGTTGGAACGTGCAAAAACTCTGAAGGTCAATGCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAAGAACGAGTATGTCGATTGGTTCAAAGTGGCGTTGATAGTGGAGCCAAATTATTGCTTGACGGAAGAGATATTGTGGTCCCAGGATATGAAAAAGGCAATTTTGTTGGTCCCACAATCCTGTGTGGTGTCACTCCCGATATGGAATGTTACAAGGAGGAGATCTTTGGCCCAGTTCTTCTTTGCATGCAGGCCAACAGCTTGGACGAGGCCATTAACATTGTTAACCAGAATATGTATGGTAATGGTGCTGCTATCTTTACCACATCTGGTGTAGCAGCGAGGAAGTTCCAAACAGAGATAGAGTCAGGCCAGATTGGAATCAATGTTCCTATTCCAGTGCCATTGCCATTCTTCTCGTTTACTGGATCCAAGGCTTCCTTCGTTGGAGACCTCAATTTCTATGGCAAGGCTGGAGTTCAGTTTTACACCCAAATCAAGACAGTTACACAGCAATGGAAGGACTTGTCAAGTGGTTCTGGCAACTCTCTAGCAATGCCAACTTCTCAGAAGTAAT

Download sequence (1.9Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g106080.2.1	SL2.50ch01:94064811..94070149	538	-	n/a

Add items to a list:

Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g106080.2	SL2.50ch01:94064519..94070389	5,871	-	n/a

Add items to a list:

Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g106080.2.1.1	SL2.50ch01:94070125..94070389	265	-	2
exon	exon:Solyc01g106080.2.1.10	SL2.50ch01:94067005..94067055	51	-	n/a
exon	exon:Solyc01g106080.2.1.11	SL2.50ch01:94066736..94066887	152	-	1
exon	exon:Solyc01g106080.2.1.12	SL2.50ch01:94066554..94066644	91	-	n/a
exon	exon:Solyc01g106080.2.1.13	SL2.50ch01:94066370..94066450	81	-	n/a
exon	exon:Solyc01g106080.2.1.14	SL2.50ch01:94065709..94065786	78	-	n/a
exon	exon:Solyc01g106080.2.1.15	SL2.50ch01:94065589..94065624	36	-	n/a
exon	exon:Solyc01g106080.2.1.16	SL2.50ch01:94065458..94065501	44	-	1
exon	exon:Solyc01g106080.2.1.17	SL2.50ch01:94065278..94065356	79	-	n/a
exon	exon:Solyc01g106080.2.1.18	SL2.50ch01:94065003..94065093	91	-	2
exon	exon:Solyc01g106080.2.1.19	SL2.50ch01:94064816..94064921	106	-	n/a
exon	exon:Solyc01g106080.2.1.2	SL2.50ch01:94069889..94069986	98	-	n/a
exon	exon:Solyc01g106080.2.1.20	SL2.50ch01:94064519..94064523	5	-	n/a
exon	exon:Solyc01g106080.2.1.3	SL2.50ch01:94069607..94069678	72	-	n/a
exon	exon:Solyc01g106080.2.1.4	SL2.50ch01:94069360..94069521	162	-	n/a
exon	exon:Solyc01g106080.2.1.5	SL2.50ch01:94069196..94069274	79	-	2
exon	exon:Solyc01g106080.2.1.6	SL2.50ch01:94068955..94069109	155	-	n/a
exon	exon:Solyc01g106080.2.1.7	SL2.50ch01:94068518..94068581	64	-	2
exon	exon:Solyc01g106080.2.1.8	SL2.50ch01:94068267..94068346	80	-	n/a
exon	exon:Solyc01g106080.2.1.9	SL2.50ch01:94067881..94067946	66	-	n/a
intron	intron:Solyc01g106080.2.1.10	SL2.50ch01:94067056..94067880	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.11	SL2.50ch01:94066888..94067004	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.12	SL2.50ch01:94066645..94066735	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.13	SL2.50ch01:94066451..94066553	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.14	SL2.50ch01:94065787..94066369	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.15	SL2.50ch01:94065625..94065708	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.16	SL2.50ch01:94065502..94065588	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.17	SL2.50ch01:94065357..94065457	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.18	SL2.50ch01:94065094..94065277	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.19	SL2.50ch01:94064922..94065002	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.2	SL2.50ch01:94069987..94070124	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.20	SL2.50ch01:94064524..94064815	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.3	SL2.50ch01:94069679..94069888	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.4	SL2.50ch01:94069522..94069606	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.5	SL2.50ch01:94069275..94069359	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.6	SL2.50ch01:94069110..94069195	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.7	SL2.50ch01:94068582..94068954	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.8	SL2.50ch01:94068347..94068517	n/a	-	n/a
intron	intron:Solyc01g106080.2.1.9	SL2.50ch01:94067947..94068266	n/a	-	n/a

Add items to a list:

Related views

Genetic loci

Tomato locus Solyc01g106080

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17705245%2Fdetails feature 17705245

User comments

Please wait, checking for comments. (If comments do not show up, access them here)

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: