Sol Genomics Network

Solanum lycopersicum gene Solyc01g090790.2

Name Solyc01g090790.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc01g090790	Length 4,676

Description

BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH

Location(s)

SL2.50ch01:84467589..84472264

GFF source

ITAG_eugene

From BOGAS: 1

Length: 4676

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc01g090790.2.1	SL2.50ch01:84467589..84472264	1,874	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc01g090790.2 SL2.50ch01:84472264..84467589 (sequence from reverse strand)
TATAGCCAACTGTCAAACACATTTATTTTTCTTATATCTACCCTTATTCCATCTATTATCTTCTCTCCAACACCAAAATTTTGAGAGAATAATAATAATAATAATAATAATAATATATTGTTGTTTTGATTCATTCATCACCAAGAAGAACACCTCCCTCTTATTTACCTTCGATATGAATCAGTGTGTACCGAGTTGGGACCTCGATGACTCTACCGTTCCTAGAAAAAATCTTATACAAACTCAATCCAATTCATTAGCCGTTGATGTCCCCTCGTATATACTCTCTATTACTCTTTCACAATAATTATTACTTTTATTTTATATTTACTGACTCAAAATTCTGAATTCGCAGATTAGATTATGAAGTAGCGGAGCTAACGTGGGAAAATGGGCAGTTAGCAATGCATGGGTTAGGGCCTCCACGGGCTAATAATAAGCCCATATCGAGCTACGGTGGCACCCTTGAATCTATAGTGAACCAAGCCACCCGTTGCAACGACGACGTTCCTCTTCATCTCCACGGGAAGTCCACCGTGGACAGGAACAAACAGAGTGGAGATGAGGTGGTTCCTTGGTTCAACAACCACAACGCGGTTGCTTACGCTCCTCCGGCAACCGGTTTAGTCGCAATGACTAAGGATGCGTTGGTGCCGTGTTCGAGGAACACCTCAAATTCGGACAACCAACGATCCGTGCACGTGCCAGGGATTGACGGCTCCACCCACGTGGGGTCGTGTAGTGGCGCCACAAACAGTAGAGACTGGACGGTGGCGCCACGCATGAGAGTACGGCCCACAAGACGTGAGTGGAGTAGCCGTGCGGATATGATTAGTGTAAGTGGAAGTGAAACGTGCGGAGGAGATAGCCGCCAATTAACGGTTGACACGTTTGATAGAGAATTTGGTACGACAATGTACACTTCTACGTCGATGGGGTCACCGGAAAACACCAGCTCCGACAAGCAGTGCACCAATAGGACGGGGGACGATCACGATTCCGTTTGCCACAGCAGAGATCAGGTTTATACCAATTTATTTTACACTTCTCTATATTTGATACTCCATATGTCCCGATTTACATGACACTTTTTATATTTTCAGAATCAAATAGTTTAAATTTGATCGAAATTATATTTATAAATTACGTAAAAATTATTATGAGTCACAACAATTGATAATTTAAAATGTTTATAAGATATATAAAAAATTTATGATTAAAAATAAACTTATTTAACTCTTAAAATTCAAAAAATAACGTATAAAATTAAACGAAAGCAATATCAAATAAACCTTTTTTAACCATAAATTTACAAATATCTTTTAAATAATGTCAACGGGTGCCACCAATGATATTTTTTATATTAAATATGTAAATTTTATTGATATTTATAATTAAAATTAAATTATTTAATTATTATAATTTGAACTATGAACATAAATTGAGATGTAAAAACTTAGATTTTTATCATTAAGAAAATCAAATGATAAAAAACAGAAGTCATGCAACATCTCATGTTATTATTTTATTATTAAGAATATTTAGAAATTATTTTCAGACAATACGGTAAAAGTTAAAATCGTATAATAGGGCCATATATTATATATAATATAAAAATGAAATGCATGTTTTTCAGCTGAGACGTGACATAATTTTATTTTAAAAACTTATATAATATTACTAATATTTGTGATTATTTATTAACCGACAGAAGGAAGGAGGTGATGATGAGGATGACAATGACAACAAAAAAGGGTCTAAAAACTCCTCATCTTCTACAAAGAGGAAGAGGGCAGCCGCCATCCACAACCAGTCTGAACGAGTAAGGGCATGTTTGGACATGAATTTGTTTTTTTTTCTTCAAAATATTGTGTTAGATTTTGAAGATGATTGAAAAATTGGTGAAGTCTATATATATTTTTTTATCGCTTTTTAAAAATAAAATACATATTTGAAAATAGCTCAAAATTTTTAATATCATCTATACGTGTCAAATATTATTTTTTCAAAAAAAATCACTCAATTCATGTCCAAACGCCTGTTAAAAATCTCTCTTTTGTGGTCTTTGTTCAAAAAAAAAAATAGAATGTGATATTATGAATTAATTATGTTTTTTTTAATATCTCTAGAAAAGAAGAGACAAGATTAATCAAAGGATGAAGACACTGCAGAAGTTGGTTCCAAATTCGAGTAAGGTAATGGGAATTTAAATATTATTAAGTATTTTCACATGTGTTATTATTTATTTATTTTTGCATAAAAGGAATAATCTAGTATCTGTGGTTATTCACCTATTTAAACTTTACCATTAAATAGAGTGTCTAGCTATCCTCAAGTTATCGCAATTAATATAAAAAGATTTTAAAAAATTATTTTGTTTTGTTTTTTCCGCAAGTATTGTTACTGGTAGAAAAGTGTCTTAATTTTATTATCCCTTAGGGGAAAAAGGTTACTTAAAAAAATCAACGATTTGAATGGAAGTGTCAGTGAAGATTGGCTATAAGCGAGCAGCTTTAAGATAGAAAACAAAAAGGTACAATAGTAGATGTGTTCAAATAATGGGAGTTGGAGACAATTTAGTGGTAAGTGGTCCAATACTTTTTGAAAGGGCAACAAATTAAATATGGAAGTGAATATCTAGGAGAAGTAACAAAATTGTAATGATCTAAGTCCACATAAATATTGTGGTGAGGGAGACAAATCGACAAATGTTTGTTGGTTGAGAAGACAATCTTATTTAACCACATAAATCCAACCTTGGGGGCCTTAAACCAATAGTACAAAGCCTCTTTGTGGTTGTCTTAGACTTCAATCACTTGTGCTGAGCTTTCTACAGTTACTTCTTTTTATAAACTACTTACATATTTCGTACTTCCTCAGTCTCTGTTTAATTTGTGAAATAACAAACATATTAAGATATCAATTATTATCATATGTTAGTTATAATTTTATTCTTAACTTAAAAGATTATGCAATCCCCAAATTTAATAAATGTATTTTTTTATTTCAAAAAACATGCATTTCAACTTTGTAGTACTAGAAATTTTTTTAAATTAAATAAGAGCATATTAGGAAAAAAATTATTGTCCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGAATAAATATAAAAAATATAAACAAGTAAATAGGGACATAAGGAGTATTATCTATTTTGAGATTCGACTTATTCAGATTCTTATTACATAAGGTCTGTTAAGAGAAAAGTATTTCCTATTAATATTTTTTTTTAATTTTAAAGTTAAAATTCTGAGATTTCTAAATAATAAAGTATGAAGAAATCATATACACTTCATCATATCTTTGGGTCGTCAACATTTGATGTGTATAATTTTTTCTTATTAAAGTGAAACAACTAGAACCAAAAGAAATTTACTTCGACGAAAAGAGAACTTCAAAAAATAAATAGAAACAACCAAAAGCAAACAATGTGTCTTTCATATGTTACATAAATAATAATGATGGCATTTATGATACCCTTGTACTTTATTTGGGGGTGGATATATGTAACAATTAAATCATAACTAATGTCTATATATCTCATTATGTTGTTTCTCTAGGGCTTTGTAAATCTATTAATCATGTTCATACTTGTCATAATGTTTGGTTGGAAATAGAATTTGTACCACCATTAAAATGTGCGGTGGTAATGGAATGGTTGAAATTTGTTTAGCCCTACCTAGAATTTTAGGTGGATATGACTTTTAGAAATGAAGCTCGCATAAAAAGTATAAATTTAATAGTTCCACTTTGGTCCTACTGCGCGTGTGATAAATTTTAAATTTTGAATTCGTCTTTGTGTCAGCAGACAGATAAAGCATCAATGCTAGACGAAGTGATAGAATATTTGAAGCAACTTCAAGCTCAAGTGCACATGATGAGTCGGATGAACATGTCACCAGCCATGATGTTACCATTGGCTATGCAACAACAATTACAAATGTCTATGATGGGTATGGGTATGGGTATGGGTATGGGCATGGGAGTTGCCGGAGTTTTTGATATCAACAACCTTAGCCGCCCCAATATCCCCGGACTTCCTTCCTTTCTCCACCCTTCTGCCGCCTTCATGCAGCCTATAACCTCCTGGGATAACTCAAACTCCGCGCCTTCTCCTCCCTCTGCTGCTATGCCTGATCCTTTAGCTGCCTTACTCGCTTGCCAATCACAGGTAATTTAAGTCGTTTGATGCAAAACAAGGTTAAATTAATTATTATACGAGATAAATAATTTCACGATTATCAATTTTATATGGATGCAGCCAATTAACATGGATGCGTATAGTAGGATGGCAGCATTGTACCTGCAATTCCAACAGCCCCCAACTGGCTCTGGCCCTAAAAATTGATAGTGTATATACCATATAGCAATAGTTACTCTCATGTTGTAAACATCTCCTAGTTTTCTTTACGTACGATTGAAATGACTAGGAGACCCTTTTACTTGTTTCGGATTGTCATTTTTGTTAAATACATAAGTTTGTTACAACTCTGTATTTCAAATTTCATCTCAGAAGTTGAATAGACTGTTACCTTTGTGAAGTGGACAAGTATATATGTAAATATTGAGATCTTTATGATCTATACTTCATTGCTAGTCAATAGTATAGTGAGTATAAACAATTATTGATATTTGATTACGTGAAACTTTTA

Download sequence region

Download sequence (4.6Kb)

Get flanking sequences on SL2.50ch01

mRNA Solyc01g090790.2.1

Ontology terms

terms associated with this mRNA

GO:0003700 – sequence-specific DNA binding transcription factor activity

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc01g090790.2.1 BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH
TATAGCCAACTGTCAAACACATTTATTTTTCTTATATCTACCCTTATTCCATCTATTATCTTCTCTCCAACACCAAAATTTTGAGAGAATAATAATAATAATAATAATAATAATATATTGTTGTTTTGATTCATTCATCACCAAGAAGAACACCTCCCTCTTATTTACCTTCGATATGAATCAGTGTGTACCGAGTTGGGACCTCGATGACTCTACCGTTCCTAGAAAAAATCTTATACAAACTCAATCCAATTCATTAGCCGTTGATGTCCCCTCATTAGATTATGAAGTAGCGGAGCTAACGTGGGAAAATGGGCAGTTAGCAATGCATGGGTTAGGGCCTCCACGGGCTAATAATAAGCCCATATCGAGCTACGGTGGCACCCTTGAATCTATAGTGAACCAAGCCACCCGTTGCAACGACGACGTTCCTCTTCATCTCCACGGGAAGTCCACCGTGGACAGGAACAAACAGAGTGGAGATGAGGTGGTTCCTTGGTTCAACAACCACAACGCGGTTGCTTACGCTCCTCCGGCAACCGGTTTAGTCGCAATGACTAAGGATGCGTTGGTGCCGTGTTCGAGGAACACCTCAAATTCGGACAACCAACGATCCGTGCACGTGCCAGGGATTGACGGCTCCACCCACGTGGGGTCGTGTAGTGGCGCCACAAACAGTAGAGACTGGACGGTGGCGCCACGCATGAGAGTACGGCCCACAAGACGTGAGTGGAGTAGCCGTGCGGATATGATTAGTGTAAGTGGAAGTGAAACGTGCGGAGGAGATAGCCGCCAATTAACGGTTGACACGTTTGATAGAGAATTTGGTACGACAATGTACACTTCTACGTCGATGGGGTCACCGGAAAACACCAGCTCCGACAAGCAGTGCACCAATAGGACGGGGGACGATCACGATTCCGTTTGCCACAGCAGAGATCAGAAGGAAGGAGGTGATGATGAGGATGACAATGACAACAAAAAAGGGTCTAAAAACTCCTCATCTTCTACAAAGAGGAAGAGGGCAGCCGCCATCCACAACCAGTCTGAACGAAAAAGAAGAGACAAGATTAATCAAAGGATGAAGACACTGCAGAAGTTGGTTCCAAATTCGAGTAAGACAGATAAAGCATCAATGCTAGACGAAGTGATAGAATATTTGAAGCAACTTCAAGCTCAAGTGCACATGATGAGTCGGATGAACATGTCACCAGCCATGATGTTACCATTGGCTATGCAACAACAATTACAAATGTCTATGATGGGTATGGGTATGGGTATGGGTATGGGCATGGGAGTTGCCGGAGTTTTTGATATCAACAACCTTAGCCGCCCCAATATCCCCGGACTTCCTTCCTTTCTCCACCCTTCTGCCGCCTTCATGCAGCCTATAACCTCCTGGGATAACTCAAACTCCGCGCCTTCTCCTCCCTCTGCTGCTATGCCTGATCCTTTAGCTGCCTTACTCGCTTGCCAATCACAGCCAATTAACATGGATGCGTATAGTAGGATGGCAGCATTGTACCTGCAATTCCAACAGCCCCCAACTGGCTCTGGCCCTAAAAATTGATAGTGTATATACCATATAGCAATAGTTACTCTCATGTTGTAAACATCTCCTAGTTTTCTTTACGTACGATTGAAATGACTAGGAGACCCTTTTACTTGTTTCGGATTGTCATTTTTGTTAAATACATAAGTTTGTTACAACTCTGTATTTCAAATTTCATCTCAGAAGTTGAATAGACTGTTACCTTTGTGAAGTGGACAAGTATATATGTAAATATTGAGATCTTTATGATCTATACTTCATTGCTAGTCAATAGTATAGTGAGTATAAACAATTATTGATATTTGATTACGTGAAACTTTTA

Download sequence (1.9Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g090790.2.1	SL2.50ch01:84467892..84472089	465	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g090790.2	SL2.50ch01:84467589..84472264	4,676	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g090790.2.1.1	SL2.50ch01:84471989..84472264	276	-	1
exon	exon:Solyc01g090790.2.1.2	SL2.50ch01:84471243..84471909	667	-	n/a
exon	exon:Solyc01g090790.2.1.3	SL2.50ch01:84470443..84470553	111	-	n/a
exon	exon:Solyc01g090790.2.1.4	SL2.50ch01:84470070..84470135	66	-	n/a
exon	exon:Solyc01g090790.2.1.5	SL2.50ch01:84468070..84468432	363	-	n/a
exon	exon:Solyc01g090790.2.1.6	SL2.50ch01:84467589..84467979	391	-	n/a
intron	intron:Solyc01g090790.2.1.2	SL2.50ch01:84471910..84471988	n/a	-	n/a
intron	intron:Solyc01g090790.2.1.3	SL2.50ch01:84470554..84471242	n/a	-	n/a
intron	intron:Solyc01g090790.2.1.4	SL2.50ch01:84470136..84470442	n/a	-	n/a
intron	intron:Solyc01g090790.2.1.5	SL2.50ch01:84468433..84470069	n/a	-	n/a
intron	intron:Solyc01g090790.2.1.6	SL2.50ch01:84467980..84468069	n/a	-	n/a

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Related views

Genetic loci

Tomato locus SlbHLH005 (bHLH transcription factor)

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17689627%2Fdetails feature 17689627

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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