Sol Genomics Network

Solanum lycopersicum gene Solyc01g079400.2

Name Solyc01g079400.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc01g079400	Length 2,975

Description

Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant

Location(s)

SL2.50ch01:78480169..78483143

GFF source

ITAG_eugene

From BOGAS: 1

Length: 2975

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc01g079400.2.1	SL2.50ch01:78480169..78483143	1,964	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc01g079400.2 SL2.50ch01:78483143..78480169 (sequence from reverse strand)
GACTTGTAGTGGAGTACTATAATAGAAGAGGAAAAAAGAAGCCCTGAGAAATAAAACAACAGTTTACTCAGAGAAAATCTGATGGAGAAACAGAGAAGTTTCTCCATTAAACCTACAAGGCTATGGCTTTTCTCTTTCACCATTTCATTTTCTCTAATCTTTTTCATCTTTTTCTCTATATGGGTTCTCAACCTTCCATTATATAGCCGTCAAGAAACTCATATTCAGTTCAACAGTAGTACTGCTACTGCTGCTTCTGCTTCTGCTTCAGTCTCTTTGAGACCCAGATCTCCTTTCAAGATTCAATCTTTAACTGGTTTTCACAAAAATTACTCAGCAACCCAAATCAAGAACTCAATTTTGGTGAGTACCCATTTCAATAGAGTTGAAAATGAGTCCCAAGTTTCTAACTTTTCAACATTTGAGGGAATCTTGGATAAGGAAAATCAGCCACAATCAGTGGCTTATGATATAAATAGTGAAAAAAATTCGACCTTTTCTGGTAACCGTTCGACTAAATCTGAAACTGTTTCTTCTAAGCGTCTTGAAATAGAAAGTACCAATAGTAGTATTCCTATTTGGAATCAGCAGCAGCAGCAACAGCAGAATGTGTCTATTGTTTTGTCTAAGAAAGAAGAAGCTTCTAGTAATTTGCTTAAGGTGGTGAATAAGAAAGAATGTGATATCACTAAAGGGAAATGGGTTTTTGATGAGAGCTATCCTTTGTACACAAATGCTTCATGTCCCTACATTGATGAAGGTTTTAGTTGTGAAACTAATGGAAGATTGGATAAGAATTATATGAAATGGAGGTGGCAACCTCAAGATTGTGACATTCCAAGGTAAAACAATAAAAACTTGACTTTTTTACCCCTTGTATTTTTCCTTTTTTTTGTGTATGTGTGTGGATTCATTGCTTAAGTTGTACACCTCCATTGTCTGGCTAGTAATAGAGTAAGAAGATTTATTAGAAAGTTTGAAATAAAATAATTCTTAGCTTGTAACTTTTGTGTGGTACAGGTTCAATGCTACTCAGATGTTGGAACTTATTAGAGGTAAAAGATTAGTGTTTGCTGGTGACTCCATCAACAGAAATCAATGGGAGTCGATGTTATGCTTGTTAATGGGAGCAATAAAAGATCCAAGAAAGGTTTATGAGACTCGTGGTCGGAGAATAACCAAAGAGAAGGGAAATTATTGTTTCAAATTTGTGGTAAATAATTTGAATCTTTAATTAACTGAATAGGCAAAGAATTGTGTTTTTCCAGTTTTCAATTTTTTTTTGATGTCATTATTGCAGGACTACCAATGTACAGTTGAGTACTATGTAACTCATTTTTTGGTTCATGAGGGCAAGGCAAGGATAGGCAGCAAACGGGCGCAGACCTTGCGTATTGATACGATGGACAAAGGTTCATCAAGATGGAGAGGGGCTGATATCTTGGTCTTTAACACTGCTCATTGGTGGAATCACCACAAGACTAAAGCAGGGTAAGCCTTTTGTTGATAGATTATAGCCAGGCAGATTCACTGTTCTTTTTCTAGCCTGTATACATATACTATACACTGATTATATGCGGATTATATATGGATTATACATCGGCTGGCTATTTTTAGCTTAAAAAGTTGGGTGGACGGTTATTTAGGTTAATTCTGCTACTTTGTTCTTCTTCGAGTTTAAGTTCTGCCAAAGACTAATGGTATGAATATGATCTCTCTAAGAAGTTCTTAGTGTAATGATCCATGTGAAGATTTATTTTAGAATATGGTACTTGGAAGTTACTTGCAGGTTTTAACTGATGTTTAATTGGAGAAGCCTATATTGGCCTGAGATGAGCTTAAATTTTGCGACATCATCAATGAGGATTCATGTAGATCAAATTAAACTTGTTTGAGATTTTGGCAAATAATTGCCGTTTAATTGGAGTACCCAACATTTTGATATGAAACCTAGTCATGATATTGTGATAGCATATAGAAAGAACCTGGCAATACCGGTTAATGAGCTAGATTGTTTTTTGGTGAAAATCAATCCTGTCAATTCTTACTATGAAGATAGAAAATAAGTTAGTAGTATTTTTGTGTGTGATGGATGCTGCATTAGCTTCCTCTAGTTACTCTCGCGTATATAATTGGTACTGTCACAACAGGAAGAATTACTACCAGGAGAGGAATCAAGTACATCCTCGTCTTGATGTTTCAACAGCTTTCGAAAAAGCCCTGACAACTTGGGCATCATGGATTGATAGACATATCAATCCAAGCAAAACACAAGTTTTCTTCAGGAGTTCTGCTCCTTCTCATTTCAGGTATGCCTTAATTTTGCTTTGCACATTCTCACAAGATCTGTGATGTATTGGCTACATGGCTCATCATTCTCTTCTTAAATTGGACAGTGGGGGTCAGTGGAACACTGGTGGGCACTGCAGAGAAGCTTCTCAACCGATCCCTGAGACTTACAGAGGCGAATATCCAGAGAAGAACATAATAGTGGAGCAAATAATAAGCAAGATGAAGATTCCAGTTACTTTTTTGAACATAACTGGTTTGTCAGATTACAGGATTGATGGTCATCCTTCTATATATGGAAGAAAACCGGGTAGCTCTTCGCGTGTTCAAGATTGTAGCCATTGGTGTCTTCCAGGGGTTCCAGATACTTGGAACGAAATGTTATATATGCATTTAGAAAGTACTAGAAGAAAAAGTTTGCCCAACTGAAACTTCATCCTCAAATTGAAATTCTTTCATTTGTTCCGCATGTTTGATAAGCTGTATATAGCTGTGAAGTTGAGGTTTGTCAATTGTTCTCTTTTGGTGTGCCAATTATTATGTCTAGAGATGGCAAATGGACGGATTAAAATAGGTTCAAATTAATACAACAGCAAACGTTGCAAAATATGAACCTAAGTTCTTCCAAATTTTAAATTTGGCTTCACCTTTGTTCCCATTATCAAAAAAAAGATTCAAGGCAAAAC

Download sequence region

Download sequence (3.0Kb)

Get flanking sequences on SL2.50ch01

mRNA Solyc01g079400.2.1

Ontology terms

terms associated with this mRNA

GO:0031177 – phosphopantetheine binding

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc01g079400.2.1 Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant
GACTTGTAGTGGAGTACTATAATAGAAGAGGAAAAAAGAAGCCCTGAGAAATAAAACAACAGTTTACTCAGAGAAAATCTGATGGAGAAACAGAGAAGTTTCTCCATTAAACCTACAAGGCTATGGCTTTTCTCTTTCACCATTTCATTTTCTCTAATCTTTTTCATCTTTTTCTCTATATGGGTTCTCAACCTTCCATTATATAGCCGTCAAGAAACTCATATTCAGTTCAACAGTAGTACTGCTACTGCTGCTTCTGCTTCTGCTTCAGTCTCTTTGAGACCCAGATCTCCTTTCAAGATTCAATCTTTAACTGGTTTTCACAAAAATTACTCAGCAACCCAAATCAAGAACTCAATTTTGGTGAGTACCCATTTCAATAGAGTTGAAAATGAGTCCCAAGTTTCTAACTTTTCAACATTTGAGGGAATCTTGGATAAGGAAAATCAGCCACAATCAGTGGCTTATGATATAAATAGTGAAAAAAATTCGACCTTTTCTGGTAACCGTTCGACTAAATCTGAAACTGTTTCTTCTAAGCGTCTTGAAATAGAAAGTACCAATAGTAGTATTCCTATTTGGAATCAGCAGCAGCAGCAACAGCAGAATGTGTCTATTGTTTTGTCTAAGAAAGAAGAAGCTTCTAGTAATTTGCTTAAGGTGGTGAATAAGAAAGAATGTGATATCACTAAAGGGAAATGGGTTTTTGATGAGAGCTATCCTTTGTACACAAATGCTTCATGTCCCTACATTGATGAAGGTTTTAGTTGTGAAACTAATGGAAGATTGGATAAGAATTATATGAAATGGAGGTGGCAACCTCAAGATTGTGACATTCCAAGGTTCAATGCTACTCAGATGTTGGAACTTATTAGAGGTAAAAGATTAGTGTTTGCTGGTGACTCCATCAACAGAAATCAATGGGAGTCGATGTTATGCTTGTTAATGGGAGCAATAAAAGATCCAAGAAAGGTTTATGAGACTCGTGGTCGGAGAATAACCAAAGAGAAGGGAAATTATTGTTTCAAATTTGTGGACTACCAATGTACAGTTGAGTACTATGTAACTCATTTTTTGGTTCATGAGGGCAAGGCAAGGATAGGCAGCAAACGGGCGCAGACCTTGCGTATTGATACGATGGACAAAGGTTCATCAAGATGGAGAGGGGCTGATATCTTGGTCTTTAACACTGCTCATTGGTGGAATCACCACAAGACTAAAGCAGGGAAGAATTACTACCAGGAGAGGAATCAAGTACATCCTCGTCTTGATGTTTCAACAGCTTTCGAAAAAGCCCTGACAACTTGGGCATCATGGATTGATAGACATATCAATCCAAGCAAAACACAAGTTTTCTTCAGGAGTTCTGCTCCTTCTCATTTCAGTGGGGGTCAGTGGAACACTGGTGGGCACTGCAGAGAAGCTTCTCAACCGATCCCTGAGACTTACAGAGGCGAATATCCAGAGAAGAACATAATAGTGGAGCAAATAATAAGCAAGATGAAGATTCCAGTTACTTTTTTGAACATAACTGGTTTGTCAGATTACAGGATTGATGGTCATCCTTCTATATATGGAAGAAAACCGGGTAGCTCTTCGCGTGTTCAAGATTGTAGCCATTGGTGTCTTCCAGGGGTTCCAGATACTTGGAACGAAATGTTATATATGCATTTAGAAAGTACTAGAAGAAAAAGTTTGCCCAACTGAAACTTCATCCTCAAATTGAAATTCTTTCATTTGTTCCGCATGTTTGATAAGCTGTATATAGCTGTGAAGTTGAGGTTTGTCAATTGTTCTCTTTTGGTGTGCCAATTATTATGTCTAGAGATGGCAAATGGACGGATTAAAATAGGTTCAAATTAATACAACAGCAAACGTTGCAAAATATGAACCTAAGTTCTTCCAAATTTTAAATTTGGCTTCACCTTTGTTCCCATTATCAAAAAAAAGATTCAAGGCAAAAC

Download sequence (2.0Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g079400.2.1	SL2.50ch01:78480425..78483062	542	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g079400.2	SL2.50ch01:78480169..78483143	2,975	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g079400.2.1.1	SL2.50ch01:78482302..78483143	842	-	1
exon	exon:Solyc01g079400.2.1.2	SL2.50ch01:78481931..78482123	193	-	n/a
exon	exon:Solyc01g079400.2.1.3	SL2.50ch01:78481653..78481843	191	-	1
exon	exon:Solyc01g079400.2.1.4	SL2.50ch01:78480835..78480993	159	-	1
exon	exon:Solyc01g079400.2.1.5	SL2.50ch01:78480169..78480747	579	-	n/a
intron	intron:Solyc01g079400.2.1.2	SL2.50ch01:78482124..78482301	n/a	-	n/a
intron	intron:Solyc01g079400.2.1.3	SL2.50ch01:78481844..78481930	n/a	-	n/a
intron	intron:Solyc01g079400.2.1.4	SL2.50ch01:78480994..78481652	n/a	-	n/a
intron	intron:Solyc01g079400.2.1.5	SL2.50ch01:78480748..78480834	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc01g079400

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17683118%2Fdetails feature 17683118

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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