Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578023 in the current build, Tomato 200607 #2

Unigene SGN-U316572

Unigene Basic Information

Unigene ID:	SGN-U316572
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316572
mRNA sequence:	Length: 1264 bp

>SGN-U316572 Tomato 200607 #1 (26 members)
CACAAACACAAAAACTCAAAAAAGCTCTGTATTTTTTCACTGCTAAAGAAAAAAAATGTCGAAGGACGTGATTGAAGAAGGACAAGCTCA
TCATCATGGAAAGGACTATGTTGACCCTCCTCCAGCTCCTCTTCTCGACATGGCTGAGCTTACCAAATGGTCTTTTTACAGAGCTCTTAT
AGCTGAATTCATCGCCACCCTTCTCTTCCTCTATGTCACCGTTGCTACTGTTATCGGTCACAAGAAACTCAACGCTCTAGACCAATGTGA
TGGTGTTGGGATTCTTGGAATTGCGTGGGCTTTTGGTGGAATGATCTTTGTCCTTGTTTACTGCACTGCTGGAATTTCTGGTGGTCATAT
TAACCCGGCGGTGACATTTGGGTTGTTCTTGGCAAGGAAAGTGTCATTGATAAGAGCAGTTGCTTACATAATTGCACAGTCACTTGGTGC
TATTTGTGGTGTTGGTTTCGTTAAGGCATTCATGAAGCATTACTACAACACAGAAGGTGGAGGTGCTAACTTTGTGCAACCTGGTTACAA
CAATGGAACTGCTTTGGGTGCTGAAATTATTGGTACTTTTGTGCTTGTTTACACCGTCTTCTCTGCTACTGACCCTAAAAGAAGCGCTCG
TGATTCCCATGTCCCTGTGTTGGCTCCTCTTCCAATTGGATTTGCTGTTTTCATGGTTCATTTGGCCACCATCCCCATTACTGGAACTGG
TATTAACCCAGCAAGGAGCTTTGGAGCTGCAGTTATTTACGGCAACGAAAAAATCTGGGATGACCAATGGATATTCTGGGTTGGACCCAT
GGTGGGAGCAATGGCAGCAGCAATATACCATCAGTTTATATTGAGAGCTGGAGCTGTAAAAGCTTTGGGATCATTCCGCAGCAACCAAAC
CAACTAAACAAGTTATCAACTTTCATTCACAAGTTCAAATTTTTCTGGCTTAATTGTTTGATTTTGTGTATGAGGATTAATTAATTAATG
TATGAACCTTTTTTTATTTTGTTCGTTTTGGTACAGTTTCATCTTTAATGTTAGTTTTTGGATGTGTATTTTAATTTGGTATGAGACTAG
AGTTGGTGGTCTATTCTCTTTCGAATAAATTTAAAGGTTTCATGTTATTTTAGCACTCAAAATCACCTTATTGGGTATTTGTTATTTTCC
ACTTGTATAGGTACCCTGTCCACTAAAACTTCCACGAAAGTCTTAATACATAACAACCATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTSB	seed	1880	2
Solanum lycopersicum	cTSC	seed	2256	1

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101425	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	199
2	118438	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	168
5	128978	Aquaporin - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	87

Preceding Unigenes (1)

Unigene	Build
SGN-U215949	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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