Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579836, SGN-U581554, SGN-U590952, SGN-U593596, and SGN-U593715 in the current build, Tomato 200607 #2

Unigene SGN-U313561

Unigene Basic Information

Unigene ID:	SGN-U313561
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313561
mRNA sequence:	Length: 1250 bp

>SGN-U313561 Tomato 200607 #1 (73 members)
GGGCGATTGGCGGCCAATCGGCCGAATTGAATTCCACTGCACTCTGTTTTTCTCAAATCACAAAATTAACCTATTCTTTATCTTTCTTTT
TGGAAAACAATACAAATGGCAAAAGATATGGAGGTTGGTACTGAATATGCACCAAAAGACTACCAAGACCCACCTCCAGCACCCTTAATT
GATCCTGAAGAGTTAGGAAAATGGTCATTTTACAGAGCTATAATTGCTGAATTCATAGCTACTCTGTTATTTCTCTACATAACTGTCCTT
ACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATC
TTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCG
TTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTAT
GTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTT
GTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTACTTGCGCCTCTACCCATTGGATTTGCG
GTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACAT
AACAAAGCTTGGGATGATCAATGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGG
GCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTATATATAAGTAT
TTGAGAAGAAAAAAAAGTCTCTTTGAATTATGTTGTTAGAGTTGTGTTGGATGTTTGGCACTTAATTTTAGATTTGCCAAACACTACATT
TCTACTTTATTTCCCTTTTTTCTTTGTGTGTGTTGGTGTTTTTGTAATTTTTACTATGCTAATGTTTTAAGCATCTAAATAATGAAAATA
GCAAGGCTATTGTCCATAAAAAAAAAAAAAAAAAAAAAATTTCCCCCCTTCCCTATTATAATGAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	10
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	9
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	6
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	6
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (73)

Alignment image suppressed for unigene with 73 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 4 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101425	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	199
2	118438	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	168
5	128978	Aquaporin - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	87

Preceding Unigenes (1)

Unigene	Build
SGN-U213516	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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