Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578499 in the current build, Tomato 200607 #2

Unigene SGN-U313081

Unigene Basic Information

Unigene ID:	SGN-U313081
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313081
mRNA sequence:	Length: 1979 bp

>SGN-U313081 Tomato 200607 #1 (266 members)
ATTCGAAATTTCGAAACTTTCAATTTCTCCTTTTATTGTTTATAGAAACGGCGTCTTGATAAACGCCGTTCTTCTCTTCTTCTTCTTCGT
TTGAATTTTAGGGTTTCGAATTTTTCAGTTTCTGTATCGAAAATGAGGGAGTGCATTTCAATCCACATTGGTCAGGCCGGTATTCAGGTC
GGAAATGCTTGCTGGGAACTTTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAGATGCCAGGTGACAAAACTGTTGGAGGGGGTGAT
GATGCATTCAACACCTTCTTCAGTGAAACTGGAGCTGGAAAGCATGTTCCTAGAGCTGTCTTTGTAGATCTTGAGCCCACTGTCATTGAT
GAAGTGAGGACAGGAACTTACCGTCAGCTCTTTCACCCTGAACAACTCATAAGTGGCAAAGAAGATGCAGCCAACAACTTTGCTCGTGGC
CACTATACCATTGGGAAAGAGATAGTTGATCTCTGCTTGGATCGCATCCGAAAGCTTGCAGACAACTGTACTGGTCTTCAGGGGTTCCTT
GTCTTTAATGCTGTTGGTGGTGGTACCGGTTCAGGTCTTGGGTCACTTCTGCTGGAGCGTCTCTCAGTTGACTATGGAAAGAAATCCAAA
CTTGGTTTCACAATTTATCCCTCACCACAGGTCTCAACTTCTGTTGTTGAGCCTTACAACAGTGTCCTGTCAACTCATTCTCTACTTGAG
CACACTGATGTGTCAATCCTTTTGGACAATGAAGCCATCTATGACATTTGCAGGCGCTCATTGGACATTGAGCGCCCTACCTACACCAAT
CTCAATCGCCTTATCTCACAGGTTATATCTTCTCTGACAGCTTCTTTGAGGTTTGATGGAGCTCTGAATGTTGATGTGAATGAATTCCAG
ACCAATCTTGTCCCCTATCCCAGGATCCATTTTATGCTTTCCTCATATGCCCCCGTCATTTCTGCTGAGAAGGCCTACCATGAGCAGCTT
TCAGTTGCAGAAATCACTAACAGTGCCTTTGAGCCATCTTCTATGATGGTTAAGTGTGACCCTCGTCATGGCAAGTACATGGCTTGCTGT
CTCATGTTCCGTGGTGATGTGGTGCCAAAGGATGTTAATGCTGCTGTGGCCACCATCAAGACTAAGCGCACCATCCAATTCGTTGACTGG
TGTCCCACAGGATTCAAGTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCTGGTGGTGACCTTGCTAAGGTACAGAGGGCTGTGTGC
ATGATCTCCAACTCAACAAGTGTTGCTGAGGTCTTCTCACGCATTGACCACAAGTTTGATCTGATGTACGCCAAGCGTGCTTTTGTGCAT
TGGTATGTCGGTGAGGGTATGGAGGAAGGTGAATTCAGTGAAGCACGTGAAGATCTTGCTGCCCTCGAGAAGGATTATGAGGAGGTTGGT
GCTGAAGGTGATGATGAAGCAGATGGTGAAGATGATGAGGAGTACTAAGCCATGATGTAGGCTGTAAAATGCCGGTCTGTTTTTATTTTC
TTCAGTGTCTTTATGTTGCACTAGTAAAAACTTTTATGTGGGTTGAATTCTGTTGGTGTTAAAACATGTGTTTGCACTTCGTGCTATCTT
CTTGGTTATGCTGTACTTTTCTTTGTAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCATGGTATTTTTTCTTGATGTCCTTG
TGCCGAATTCGGCACGAGGGGATGTTGGTACCAAGAATTAGTTATGTCATGGCAGCATATAATCACTGCCAAAGCTTTAAGATATTATCA
TATCCTAATGTGGTACTTTGATATCCCTAGATTATAAACTGTGTTATTTGCCCTGTTGAAACCAAAAGAAAGAAAACTGCTGTTATGGCT
AGAGAAAGTATTGGCTTTGAGCTTTTGACAGCCCAGTTGAACTAAAAGGGAATTCTACTCTTTTTTTTTTTTTGGGAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (36)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	9
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	5
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	32
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	13
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	27
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	9
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	24
Solanum lycopersicum	cLER	leaf 4 weeks	5127	6
Solanum lycopersicum	cLES	leaf 4 weeks	5243	7
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	8
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	6
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	11
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	6
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	9
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	7
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	14
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSC	seed	2256	6
Solanum lycopersicum	cTSD	seed	1504	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (266)

Alignment image suppressed for unigene with 266 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101452	Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	140
2	118444	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	138
5	129035	Alpha tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	55

Preceding Unigenes (1)

Unigene	Build
SGN-U212647	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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