Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U578499 in the current build, Tomato 200607 #2

Unigene SGN-U212647

Unigene Basic Information

Unigene ID:	SGN-U212647
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	212647
mRNA sequence:	Length: 1783 bp

>SGN-U212647 Lycopersicon Combined #3 (217 members)
CAAAATCTCACAATTCGAAATTTCGAAACTTTCAATTTCTCCTTTTATTGTTTATAGAAACGGCGTCTTGATAAACGCCGTTCTTCTCTT
CTTCTTCTTCGTTTGAATTTTAGGGTTTCGAATTTTTCAGTTTCTGTATCGAAAATGAGGGAGTGCATTTCAATCCACATTGGTCAGGCC
GGTATTCAGGTCGGAAATGCTTGCTGGGAACTTTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAGATGCCAGGTGACAAAACTGTT
GGAGGGGGTGATGATGCATTCAACACCTTCTTCAGTGAAACTGGAGCTGGAAAGCATGTTCCTAGAGCTGTCTTTGTAGATCTTGAGCCC
ACTGTCATTGATGAAGTGAGGACAGGAACTTACCGTCAGCTCTTTCACCCTGAACAACTCATAAGTGGCAAAGAAGATGCAGCCAACAAC
TTTGCTCGTGGCCACTATACCATTGGGAAAGAGATAGTTGATCTCTGCTTGGATCGCATCCGAAAGCTTGCAGACAACTGTACTGGTCTT
CAGGGGTTCCTTGTCTTTAATGCTGTTGGTGGTGGTACCGGTTCAGGTCTTGGGTCACTTCTGCTGGAGCGTCTCTCAGTTGACTATGGA
AAGAAATCCAAACTTGGTTTCACAATTTATCCCTCACCACAGGTCTCAACTTCTGTTGTTGAGCCTTACAACAGTGTCCTGTCAACTCAT
TCTCTACTTGAGCACACTGATGTGTCAATCCTTTTGGACAATGAAGCCATCTATGACATTTGCAGGCGCTCATTGGACATTGAGCGCCCT
ACCTACACCAATCTCAATCGCCTTATCTCACAGGTTATATCTTCTCTGACAGCTTCTTTGAGGTTTGATGGAGCTCTGAATGTTGATGTG
AATGAATTCCAGACCAATCTTGTCCCCTATCCCAGGATCCATTTTATGCTTTCCTCATATGCCCCCGTCATTTCTGCTGAGAAGGCCTAC
CATGAGCAGCTTTCAGTTGCAGAAATCACTAACAGTGCCTTTGAGCCATCTTCTATGATGGTTAAGTGTGACCCTCGTCATGGCAAGTAC
ATGGCTTGCTGTCTCATGTTCCGTGGTGATGTGGTGCCAAAGGATGTTAATGCTGCTGTGGCCACCATCAAGACTAAGCGCACCATCCAA
TTCGTTGACTGGTGTCCCACAGGATTCAAGTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCTGGTGGTGACCTTGCTAAGGTACAG
AGGGCTGTGTGCATGATCTCCAACTCAACAAGTGTTGCTGAGGTCTTCTCACGCATTGACCACAAGTTTGATCTGATGTACGCCAAGCGT
GCTTTTGTGCATTGGTATGTCGGTGAGGGTATGGAGGAAGGTGAATTCAGTGAAGCACGTGAAGATCTTGCTGCCCTCGAGAAGGATTAT
GAGGAGGTTGGTGCTGAAGGTGATGATGAAGCAGATGGTGAAGATGATGAGGAGTACTAAGCCATGATGTAGGCTGTAAAATGCCGGTCT
GTTTTTATTTTCTTCAGTGTCTTTATGTTGCACTAGTAAAAACTTTTATGTGGGTTGAATTCTGTTGGTGTTAAAACATGTGTTTGCACT
TCGTGCTATCTTCTTGGTTATGCTGTACTTTTCTTTGTACAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTATCATTTGTAGA
ATTAGCTGTTACCAATTTGTTTCGTCTGTCCGCTCAAAAAAAAAAAAAAAAACAAACTCGAGACTAGTTATCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	9
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	13
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	27
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	9
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	24
Solanum lycopersicum	cLER	leaf 4 weeks	5127	6
Solanum lycopersicum	cLES	leaf 4 weeks	5243	7
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	8
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	6
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	11
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	6
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	9
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	7
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	14
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSC	seed	2256	6
Solanum lycopersicum	cTSD	seed	1504	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (217)

Alignment image suppressed for unigene with 217 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 7 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	68	Tubulin_FtsZ Tubulin Tub_FtsZ_C	172
2	22017	Tubulin_FtsZ Tubulin Tub_FtsZ_C	143
5	56367	Alpha_tubulin Tubulin_FtsZ Tubulin AroFGH Tub_FtsZ_C	58

Preceding Unigenes (1)

Unigene	Build
SGN-U143203	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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