Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579800 in the current build, Tomato 200607 #2

Unigene SGN-U312646

Unigene Basic Information

Unigene ID:	SGN-U312646
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312646
mRNA sequence:	Length: 2343 bp

>SGN-U312646 Tomato 200607 #1 (201 members)
TTGTAGCCCCGTTTTACATCTTCCAGAGACTCCATTTGTATCGGTTCACATACAGTAGCAAAGCGCCATTATCTTACTCTACCCCATTGG
CAAACCCACAGCCACAATTTTCCAATCCTCCATTATCCCTTCTACAATTTTCTATATAAATACCCACATCTCTCTGCTCTACTCCCTTAT
TATCAACAACAACCACCAAATTTCTTCTTTTTTTTCTTCGATAGTAGCAATCTATCAACAAAAACAGAGACCCCATCACAAGAATCTTGG
AATTTTAGTGTTGGGTTTAAGAGGAAAAGGGGTTATTGTATTTTGCAGTTTTGAGGGTAAAGCCCAGTTTAACAAGTTGTAGACATCACG
GCTATACACAAAGTAAACCGCCGACCACTTTTACATGTTCCAGCAGTACGTCGTAAGGGTTGTGTAACAGCTACTAACCCTGCGCCGCAC
GGTGGACGTGGCGCTTTGCCTTCTGAAGGTGGTAGTCCTTCCGACCTCCTCTTCCTTGCCGGCGGCGGTTCTTTCCTCTCCTTCTCCTAC
TAGATATAGTTATACTTACTATAGATCTCTAGCTTATTACGTACAGTTGTATCTAGTATTCTATTGATTATTCGAAGAAAACACACAAAA
AGAAGTAAAGATGATGCTCAAAATTAAGAGGGTTCCTACGCTTGTTTCTAACTTTCAAAAGGATGAGGCTGATGAAATTGCTGCTCGTGG
TGCTGGTTGTGGCCGGAATTGCCTCAGGAATTGCTGCCTTCCAGGTTCAAAGCTGCCACTGTATGGTTTCAAAAATTTGAGCTACGGCAA
GTCTGTCGCCGATGAAACAAAGGAATCTCCGATCGACTTTCTGGAATCCCTTGTTCTTGGGGAATGGGAGGATCGTCAGCAGAAAGGCCT
CTTTCGCTATGATGTCACTGCTTGCGAAACCAAGGTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAA
GAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTT
GCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGC
CATAAATGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTT
CCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCA
TCTTCACTTCCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAA
GATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTC
TTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGTGCTATGC
GGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTT
GAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGA
AGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCAC
ACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTT
CATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTG
ATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGG
AGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACTTGGCCCCCCCCCAAAATTTACGGGATGGGATCCCAAAAATACCCCTGGGCCCTACCATAAGGGAGGTTCCGGGCCAA
TTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (31)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	17
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	6
Solanum lycopersicum	LC	Leaf Mature leaves	5712	26
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	10
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	12
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	39
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	7
Solanum lycopersicum	cLES	leaf 4 weeks	5243	8
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	15
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	9
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (201)

Alignment image suppressed for unigene with 201 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101415	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	231
2	119724	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	13
5	129425	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	22

Preceding Unigenes (1)

Unigene	Build
SGN-U213001	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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