Sol Genomics Network

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This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U579800 in the current build, Tomato 200607 #2

Unigene SGN-U213001

Unigene Basic Information

Unigene ID:	SGN-U213001
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213001
mRNA sequence:	Length: 2264 bp

>SGN-U213001 Lycopersicon Combined #3 (144 members)
TTGTAGCCCCGTTTTACATCTTCCAGAGACTCCATTTGTATCGGTTCACATACAGTAGCAAAGCGCCATTATCTTACTCTACCCCATTGG
CAAACCCACAGCCACAATTTTCCAATCCTCCATTATCCCTTCTACAATTTTCTATATAAATACCCACATCTCTCTGCTCTACTCCCTTAT
TATCAACAACAACCACCAAATTTCTTCTTTTTTTTCTTCGATAGTAGCAATCTATCAACAAAAACAGAGACCCCATCACAAGAATCTTGG
AATTTTAGTGTTGGGTTTAAGAGGAAAAGGGGTTATTGTATTTTGCAGTTTTGAGGGTAAAGCCCAGTTTAACAAGTTGTAGACATCACG
GCTATACACAAAGTAAACCGCCGACCACTTTTACATGTTCCAGCAGTACGTCGTAAGGGTTGTGTAACAGCTACTAACCCTGCGCCGCAC
GGTGGACGTGGCGCTTTGCCTTCTGAAGGTGGTAGTCCTTCCGACCTCCTCTTCCTTGCCGGCGGCGGTTCTTTCCTCTCCTTCTCCTAC
TAGATATAGTTATACTTACTATAGATCTCTAGCTTATTACGTACAGTTGTATCTAGTATTCTATTGATTATTCGAAGAAAACACACAAAA
AGAAGTAAAGATGATGCTCAAAATTAAGAGGGTTCCTACGCTTGTTTCTAACTTTCAAAAGGATGAGGCTGATGAAATTGCTGCTCGTGG
TGCTGGTTGTGGCCGGAATTGCCTCAGGAATTGCTGCCTTCCAGGTTCAAAGCTGCCACTGTATGGTTTCAAAAATTTGAGCTACGGCAA
GTCTGTCGCCGATGAAACAAAGGAATCTCCGATCGACTTTCTGGAATCCCTTGTTCTTGGGGAATGGGAGGATCGTCAGCAGAAAGGCCT
CTTTCGCTATGATGTCACTGCTTGCGAAACCAAGGTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAA
GAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTT
GCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGC
CATAAATGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTT
CCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCA
TCTTCACTTCCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAA
GATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTC
TTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGTGCTATGC
GGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTT
GAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGA
AGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCAC
ACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTT
CATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTG
ATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGG
AGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	10
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	12
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	39
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	7
Solanum lycopersicum	cLES	leaf 4 weeks	5243	8
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	15
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	9
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (144)

Alignment image suppressed for unigene with 144 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	57	Chloro_ABbind	219
2	23490		12
5	56849	Chloro_ABbind	21

Preceding Unigenes (1)

Unigene	Build
SGN-U143517	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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