Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578498 in the current build, Tomato 200607 #2

Unigene SGN-U312495

Unigene Basic Information

Unigene ID:	SGN-U312495
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312495
mRNA sequence:	Length: 1084 bp

>SGN-U312495 Tomato 200607 #1 (26 members)
TCGCATCCTGAACCTATTTGGTATTCCCTTTCTCTCTCTGAAGAAAATCATTGATTAGATTCGTTGTGTAGATTTTGGTTATCTGCAGTT
TTTGTTTTTCATTTTAAATTTGTGAATCGAGAGTGTATACGAATTTATTCAAGGAAAACACTTTTAGGAGCTTTTGTTGATCCTTCAATG
GCCGCACCACCGGCGAGGGCTAGAGCAGACTATGATTATCTCATTAAGCTTCTTTTGATCGGCGATAGTGGTGTTGGTAAGAGTTGTCTT
CTTTTACGTTTCTCTGATGGTTCCTTCACCACAAGCTTCATCACAACTATCGGAATTGATTTTAAAATTCGAACCATTGAGCTTGATGGA
AAAAGAATCAAGCTTCAGATATGGGATACAGCTGGTCAGGAACGTTTTCGGACCATCACTACTGCTTACTATCGTGGAGCCATGGGTATA
CTGTTGGTGTATGATGTAACTGATGAATCCTCCTTTAACAACATCAGGAACTGGATTCGTAACATTGAGCAGCATGCCTCAGACAATGTT
AACAAAATACTTGTAGGGAACAAGGCCGACATGGATGAAAGCAAGAGGGCTGTCCCTACAGCAAAGGGTCAAGCACTTGCAGATGAGTAC
GGAATTAAGTTTTTTGAAACTAGTGCAAAGACAAATCTTAACGTGGAACAAGTTTTCTTCTCAATAGCAAGAGATATAAAACAAAGGCTT
GCAGACACAGACTCCAAGGCCGAGCCGTCAACACTCAAGATTAATCAACCAGAAGCAGGAGCTGGAGGTAGTCAAACTTCCCAGAAATCA
GCTTGTTGTGGTTCATAAAAATGAGCTCAAGGAAATGGAAAGCTGAAGTTGGAGGGCACTTTGTAATATGTTTGTTTATTGGTGATTCTT
TTGAAATTTTAACGTGTGAAAGATAGGTTTGAGTATTATTTGTTGCTAACACCTTTCCAGTTTCCTTCGACCTGTAACCTAGCTGTTTAT
GTGTACAACTTTTATTACGGCTACCTTAAACTTGATACTACTAACTTTATCAATAGGTAAATTAGTATCTAAAATTCAGTAAAAAAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
er43	ethylene-responsive small GTP-binding protein

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 3 | blast: 2 | go: 13 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118418	Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	280
5	128935	Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) Ras small GTPase Rab type - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) - Biological Process: protein transport (GO:0015031)	203

Preceding Unigenes (1)

Unigene	Build
SGN-U213619	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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