Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578814 and SGN-U580048 in the current build, Tomato 200607 #2

Unigene SGN-U312356

Unigene Basic Information

Unigene ID:	SGN-U312356
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312356
mRNA sequence:	Length: 2082 bp

>SGN-U312356 Tomato 200607 #1 (29 members)
CTCTTCTCTTTCTCTTTCATTTCACTCTTTGTAGATCACACAAAAATGGCGGAGGCAGAGACGTTTGCATTTCAAGCTGAGATCAACCAG
CTTCTGAGTCTCATCATCAATACTTTTTATAGTAACAAAGAGATCTTTCTCAGGGAACTCATTAGTAACTCTTCTGATGCACTGGACAAG
ATCCGTTTCCAGAGTTTGACTGACAAGAGCAAGCTAGATGCTCAACCTGAACTTTTCATTCACATCGTCCCTGACAAGACCAACAATACC
CTCACAATCATTGACAGTGGTGTTGGTATGACAAAGGCTGATCTGGTGAACAACCTTGGTACAATTGCTAGGTCTGGCACCAAGGAATTT
ATGGAGGCCATTGCTGCTGGTGCTGATGTTAGCATGATCGGGCAATTTGGTGTTGGTTTCTATTCTGCTTATTTGGTTGCTGAGAGGGTG
GTTGTGACCACAAAGCACAATGATGATGAACAATATGTTTGGGAATCACAAGCTGGTGGTTCATTCACTGTTACGAGAGATACATCTGGT
GAGAACCTTGGCAGGGGTACCAAAATGACCCTCTTCCTCAAGGAGGACCAGCTTGAATACCTTGAGGAGCGAAGGCTCAAGGACCTTATT
AAGAAGCATTCTGAGTTCATCAGCTATCCAATCTCTTTGTGGGTTGAGAAGACCATAGAAAAGGAAATCTCGGATGATGAGGACGAAGAG
GAGAAGAAAGATGAGGAAGGAAAGGTAGAGGAGGTTGATGAAGAAAAGGAGAAGGAAGAGAAAAAAAAGAAGAAAATTAAGGAAGTCTCT
AATGAGTGGTCATTGGTTAATAAGCAGAAGCCCATATGGATGAGGAAGCCCGAGGAGATCACAAAAGAGGAGTATGCTGCATTCTACAAG
AGCCTGACAAATGATTGGGAAGAGCATTTGGCTGTCAAGCACTTCTCTGTTGAAGGTCAGCTTGAGTTTAAGGCTGTTCTTTTTATTCCA
AAGAGAGCTCCTTTTGACCTCTTTGACACCAAGAAGAAGCCCAACAATATCAAGCTCTATGTTCGCCGTGTGTTCATCATGGATAACTGT
GAGGAATTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAAGATCTTCCCCTCAACATCTCTAGAGAGATGTTGCAG
CAGAATAAGATCCTGAAGGTTATTCGCAAAAACTTGGTGAAGAAGTGCATTGAGCTATTCTTTGAAATTGCTGAAAACAAAGAAGACTAT
AACAAGTTCTATGAGGCCTTCTCAAAGAACCTCAAGCTTGGTATCCATGAGGATTCACAGAACAGGTCTAAGTTTGCTGAACTGCTGAGA
TATCACTCCACAAAAAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTAACCAGGATGAAAGAAGGCCAGAATGATATTTACTACATT
ACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCACCCTTCCTTGAGAAGCTGAAGAAGAAGGGTTATGAGGTTCTTTACATGGTTGATGCT
ATTGATGAGTATTCAATTGGTCAATTGAAGGAATTTGAGGGTAAGAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGAGGAGACT
GAAGATGAGAAGAAAAAGCAAGAAGAACTAAAGGAGAAGTTTGAGGGTCTTTGCAAGGTGATTAAGGATGTTCTAGGTGACAAGTCCGTC
AAGGATTTGGTTCTATTGTTGTTTGAGACTGCTCTTCTCACTTCAGGTTTTAGCCTTGATGAGCCAAACACATTTGGCAACAGAATTCAC
AGGATGCTGAAGCTTGGTCTGAGTATCGATGAGGATGGTGGAGATGCTGAAGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCC
GAGGGCAGCAAGATGGAAGAAGTCGACTAAATCTATAGGATGCCGGTGTTTTGTTTTGATTATTATAAAGCCCTTAACCCCAGTAGTTTT
TGTTTCTTCTACTCAGCTCCACCATCTGGACATGATATGTTTTGTTTTTACTGCATTCTAAGAGTAGTATTCATTGGCTCATTTTGTTAA
AAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Hsp90-1	Heat shock protein 90-1	defense signal transduction

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	6
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101540	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	81
2	118502	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	77
5	128990	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	76

Preceding Unigenes (1)

Unigene	Build
SGN-U212643	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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