Sol Genomics Network

Unigene SGN-U270241

Unigene Basic Information

Unigene ID:	SGN-U270241
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270241
mRNA sequence:	Length: 1766 bp

>SGN-U270241 Solanum tuberosum #4 (22 members)
GTTCAGACCAAATATGGCAAAGAGTGGCGTTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAA
GGAATATGTGTTGACTTTGGACCATACTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTCTTGAATTCTATGCACCTTGGTG
TGGACACTGTAAGAATCTTGCTCCTGAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATCGTTCTAGCTAAGTATGA
TGCAAGTGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATCTTGCGGGATGGAGGAAAGAA
AGTTCAAGAATATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTATTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTC
GAAGGAGGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTA
TTTAACACTAGCTGAAAAACTGCGAGGCGAGGTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAA
GCCCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTCTGAGGACTTTGAAGTCGATGCAATGGAGAAGTTCATTTCAGA
ATCTAGTATTCCTATTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTTGAAGGCACCAACGCCAAGGC
ATTGCTATTTGTGAACTTTAGCTCTGATTTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGCTTTACAAAGGGGATGGGGTGAG
CTTTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGTACTTCGGACTGAAGCCAGAACAGGCACCTGTGATCATCATAATGGA
CACTGAGGAACAGAAGTATGTTAAGGACCATGTGGAACCTGATGCCGTTGCTGCTTATTTGAAGGATTACAAGGATGGAAAACTGAAGCC
ACATGTGAAGTCACAGCCCATCCCTGAAGTGAACGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAACTC
GGCAAAAAACGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTCGCTCCAATTTTGGATGAAGTGGCTGTATCATT
TGAAAGCAATCCTGATGTTCTCATTGCAAAACTGGATGCAACTGCAAATGATCTCCCTAAAGGTGACTTCGACGTTCAGGGATTCCCTAC
CATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTTATCGAGAATAATCG
TGACAAGCCTGCTCAGTCAGACTCTGCCAAAGTTGATTCAGCAAAGGATGAACTTTAGAGGACTCTAGGAACATTGTGTACTGGTGGATT
CAAGTTTTGTTGGAAGCATTGTGTTCTGGTGGATTCAACCTCCCACCCGGCCCTCTTTCCCGACTGCTGCTCTCCCAATGCACTCTTCGC
TTCCTATGCTTCCCTTGTAGTTCTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGTTGGAAT
ATTATGAGTTATTATCTATTGAGAAGTTCTCCAAAAAAAAAAAAAAAAAACTCGAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	9
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	39	Thiored Thioredox_dom2	262
2	22043	Thioredoxin Thiored Thioredox_dom2 Disulph_isom	98
5	56540	Thioredoxin Thiored Thioredox_dom2 Disulph_isom Calsequestrin Disulphide_isom	33
1.1	101384	Thioredoxin-like fold	404
2	118534	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	61
5	129257	Thioredoxin fold Endoplasmic reticulum targeting sequence Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Disulphide isomerase - Molecular Function: isomerase activity (GO:0016853) Thioredoxin domain Protein disulphide isomerase - Cellular Component: endoplasmic reticulum (GO:0005783) - Molecular Function: isomerase activity (GO:0016853) Thioredoxin-like fold	28

Preceding Unigenes (2)

Unigene	Build
SGN-U245137	Solanum tuberosum #3
SGN-U251822	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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