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Unigene SGN-U206733

Unigene Basic Information

Unigene ID:	SGN-U206733
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206733
mRNA sequence:	Length: 422 bp

>SGN-U206733 Solanum melongena #2 (1 members)
GAAAAAGCAGCAAAACCAAAAACTCTGTTTTCTTTCACTGCCAATTATGTCGAAGGACGTCATTGAAGAAGGACAAGCTCATCACCATGG
AAAAGACTATGTTGACCCTCCTCCAGCTCCCCTTTTCGATATGGCTGAGCTCGCCAAGTGGTCTTTTTACAGAGCCCTCATAGCTGAATT
CATCGCCACCCTTCTCTTCCTTTATGTCACCGTCGCCACCGTTATTGGTCACAAGAAGCTCAACGTTGCTGACCAATGTGATGGGGTTGG
CATTCTTGGAATTGCTTGGGCTTTTGGTGGCATGATTTTCGTCCTTGTTTACTGCACTGCCGGAATTTCTGGTGGTCACATTAACCCGGC
GGTGACGTTTGGGTTGTTCTTGGCAAGGAAAGTGTCGCTGATAAGAGCAGTTGCTTACATGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E514191
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|9931530\|gb\|AAG02208.1\|	246.5	5.4e-65	95.2	375 bp (88.9%)	2
Description:	gi\|9931530\|gb\|AAG02208.1\| plasma membrane intrinsic protein PIP2 [Solanum chacoense]
arabidopsis	blastx	At4g35100.1	212.6	5.4e-56	84.8	375 bp (88.9%)	2
Description:	At4g35100.1 68411.m04535 aquaporin, putative similar to aquaporin GI:1311536 from [Spinacia ole…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005215 transporter activity
GO:0016020 membrane
GO:0006810 transport

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30292 (126 Aa)

MSKDVIEEGQAHHHGKDYVDPPPAPLFDMAELAKWSFYRALIAEFIATLLFLYVTVATVIGHKKLNVADQCDGVGILGIAWAFGGMIFVL
VYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMX

SignalP predicts non-secretion with a score of 0.178

IPR000425 Major intrinsic protein

Prediction based on longest six frame method

>SGN-P209168 (140 Aa)

KKQQNQKLCFLSLPIMSKDVIEEGQAHHHGKDYVDPPPAPLFDMAELAKWSFYRALIAEFIATLLFLYVTVATVIGHKKLNVADQCDGVG
ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYM

SignalP predicts non-secretion with a score of 0.09

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	62	MIP	192
2	22002	MIP	174
5	56307	MIP	92
1.1	101425	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	199
2	118438	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	168
5	128978	Aquaporin - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	87

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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