Sol Genomics Network

Unigene SGN-U578712

Unigene Basic Information

Unigene ID:	SGN-U578712
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1275 bp

>SGN-U578712 Tomato 200607 #2 (86 members)
TTTTCTCACATTAGTTTCTTCCACTCCCCACTTCCCCCTCACGTCCGCCGGCGGAGGTTAATCGAGAAGAAACAATGGCCTTCATCAAAG
TCCAGAAGACAAGGGCTTATTTTAAGCGTTTCCAGGTTAAATTCAAGAGAAGGAGAGAGGGGAAAACAGATTACAGAGCCAGGAATCGCT
TGATCAATCAGGACAAAAATAAGTACAACACTCCTAAATATCGTTTGGTTGTCCGATTTACTAACAAGGACATAATTGCACAAATTGTGT
CTGCTAGTATTGCTGGTGACATGATTCTTGCCTCTGCTTATGCTAACGAGCTGCCTCGTTATGGCCTAGAAGTTGGACTGACTAATTATG
CTGCTGCCTACTGCACTGGACTTCTTTTGGCAAGGAGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTATGAAGGGAACCTTGAGGTCA
ATGGGGAGGACTACTCTGTTGAACCTGCTGAAAGCAGAAGGCCTTTCCGAGCTCTCTTGGATGTTGGCCTTCTAAGAACTACTACAGGAA
ATCGTGTTTTTGGTGCTCTCAAGGGTGCATTGGATGGTGGACTTGATATTCCTCACAGTGAGAAGAGGTTCGCTGGATTCAGCAAGGATT
CCAAGCAACTTGATGCTGATGTTCACCGCAAGTACATATATGGTGGCCACGTTGCTACATATATGCAGACTCTAATTGAAGATGAACCAG
AGAAATATCAGACACACTTTAGTCAGTACATCAAAAAGGGTTTTGAGGCTGATGGCCTTGAGGAGATGTACAAGAAGGTTCATGCTGCCA
TTCGTGCTGATCCAAGCCCAAAGAAATCTGAGAAGCAACCTCCTAAACAGCACAAGAGGTATAATCTGAAGAAGCTAACATACGAGGAAA
GGAAGGCTAAGTTGATTGAGAGACTGAATGCTTTGAATTCAGCTGCTGGAAATGACGATGATGATGAGGATGACGAGTAAACAGCAGTGC
AAGAGTCCTGAAATATTATTGTTGCTTATGCTCTTTTTATACTCTGTTTTTTTCTTCTTTATTGAGATCTCAGTTTTGCATGCTCTGTAG
AATGATAATTTACCAATTTGAATGTCCTAAAATTTTATACTCAGCCTGATAAATCTGGCATGGAGTGTTGCATTATGTCACTTGCAAGGT
AACCTTGCCTACTTGTTATTGCCTTGCCAATGGCAATGTGTTTGTAGCGTTAATGTCTAGGCAATTTCTTCACTAATTGATTCTAGCTGC
TGGTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc06g082870	Solyc06g082870

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LeMiToFr02	fruit	18697	1
Solanum lycopersicum	LeMiToLf01	leaf	30679	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	5
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	6
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (86)

Alignment image suppressed for unigene with 86 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312659	Tomato 200607 #1
SGN-U333802	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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