Sol Genomics Network

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Unigene SGN-U578607

Unigene Basic Information

Unigene ID:	SGN-U578607
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1365 bp

>SGN-U578607 Tomato 200607 #2 (290 members)
TGGGCGATTGGCGGCCAATCGGCCGAATTGACATCAAACATTGATATTCATCTCTTCAATCTTTTGTATTCACATATTCTATTTATTCAA
TACACTTAGGAAAACACTTTACCAAGAAATTAAGATGGAGAACTTCCCAATTATTAACTTGGAAAAGCTCAATGGAGATGAGAGAGCCAA
CACCATGGAAATGATCAAAGATGCTTGTGAGAATTGGGGCTTCTTTGAGTTGGTGAACCATGGAATTCCACATGAAGTAATGGACACAGT
AGAGAAAATGACAAAGGGACATTACAAGAAGTGCATGGAACAGAGGTTTAAGGAACTAGTGGCAAGTAAGGGACTTGAGGCTGTTCAAGC
TGAGGTTACTGATTTAGATTGGGAAAGCACTTTCTTCTTGCGCCATCTTCCTACTTCTAATATCTCTCAAGTACCCGATCTTGACGAAGA
ATACAGAGAGGTGATGAGAGATTTTGCTAAAAGATTGGAGAAATTGGCTGAGGAGTTACTTGACTTACTCTGTGAAAATCTTGGACTTGA
AAAAGGTTACTTGAAAAATGCCTTTTATGGATCAAAAGGTCCCAACTTTGGTACTAAAGTTAGCAACTATCCACCATGTCCTAAGCCCGA
TTTGATCAAGGGACTCCGCGCTCATACAGACGCAGGAGGCATCATACTTCTGTTCCAAGATGACAAAGTGAGTGGCCTTCAACTCCTCAA
AGACGAGCAATGGATCGATGTTCCTCCCATGCGCCACTCTATTGTGGTTAACCTTGGTGACCAACTTGAGGTGATCACTAACGGGAAGTA
CAAGAGTGTGCTGCACAGAGTAATTGCACAAACAGACGGGACACGAATGTCATTAGCCTCATTTTACAATCCAGGAAGTGATGCAGTAAT
ATATCCAGCAAAAACTTTGGTTGAAAAAGAGGCAGAGGAAAGTACACAAGTGTATCCAAAGTTTGTGTTTGATGATTACATGAAGTTATA
TGCTGGACTCAAGTTTCAAGCCAAAGAGCCAAGATTTGAAGCAATGAAGGCAATGGAAAGTGATCCAATTGCAAGTGCTTAGATCCCAAT
TCAATTAAAAAAATTGGTGTTTGAAAAATATATTTAAATATAGCAATCTATGTATACACATTATTTGCTCTTCTTATGTATGGTAGAATA
AAGTTAGTATTAAAAAAGATTGTGATTTGCTGCATATGTATCAAAAAGAGTCCTAATATTTGTATCTATAAATAAGGTGCCTTCTAGTGA
AATTATACAAATAATAATTTGGAGTGTATTGTTCTTTCTCATGTAATTTAACTTTTAAGTATCTTACTTTACAATATACTGTTCACTTAT
TGAACATATTGAGTG

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
efe	ethylene-forming enzyme	ethylene-forming enzyme
LeACO1	1-aminocyclopropane-1-carboxylate oxidase 1

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	17
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	16
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	4
Solanum lycopersicum	LeMiToLf01	leaf	30679	10
Solanum lycopersicum	LePU	Pericarp Turning stage of fruit ripening.	1542	7
Solanum lycopersicum	Sl_RootSSH04	root	171	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	14
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	26
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	31
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	9
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	112
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	16
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	vSlycmRNA		8362	5

mRNA member sequences (290)

Alignment image suppressed for unigene with 290 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (12)

Annotations (manual: 4 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U314592	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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