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Unigene SGN-U454388

Unigene Basic Information

Unigene ID:	SGN-U454388
Unigene Build:	Nicotiana tabacum #2
Date:	2008-07-17
Organism:	N.tabacum
Alternative ID:	none
mRNA sequence:	Length: 434 bp

>SGN-U454388 Nicotiana tabacum #2 (1 members)
TAGTAATCGCTGTACTTTTGCTTCATTCTGCTGGATTCCTTGTAGGGTATCTGGCTGCAGCCTTGGGTGGTCTCAGGGAACCTGAGAGAC
GTGCTATATCCATTGAGGTTGGCATGCAGAATTCCTCCTTGGGAGTGGTTCTAGCGACCGCACATTTTGCATCCCCATTGGTTGCATTAC
CTCCTGCAATGTCAGCTGTTATTATGAACATAATGGGCAATACTTTAGGTTTCTTTTGGAGATATATTGACCCTTCTGATTCAAAAACTA
GTCCGGAAGCCACTGATAAATCATAGTTGGCTGATAAAATCGTAGTATTCATGTTCAAACATGGTAACCACTTTTTCCTGCTGATAAAAT
TGTTGTGAACTTGGTAACTCCTCTCTGTTTATATTCTGTCCCAAATGAGTTCAATACAAATTCGTGTTGGATTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Nicotiana tabacum	TT	Trichomes and senescent leaf	16944	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E829298
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (1)

Expression data for Unigene: SGN-U454388

Template:	TT40_G12_at
Platform:	Affymetrix TobEA
Experimental Design:	TobEA

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157354356\|emb\|CAO46971.1\|	124	2e-27	77.42	279 bp (64.3%)	3
Description:	unnamed
arabidopsis	blastx	At1G78560.1	65.5	1e-11	60	165 bp (38.0%)	3
Description:	bile acid:sodium symporter family protein \| chr1:29551739-29553657 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P394115 (102 Aa)

XVIAVLLLHSAGFLVGYLAAALGGLREPERRAISIEVGMQNSSLGVVLATAHFASPLVALPPAMSAVIMNIMGNTLGFFWRYIDPSDSKT
SPEATDXIIVG**

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P475355 (121 Aa)

TERSYQVHNNFISRKKWLPCLNMNTTILSANYDLSVASGLVFESEGSIYLQKKPKVLPIMFIITADIAGGNATNGDAKCAVARTTPKEEF
CMPTSMDIARLSGSLRPPKAAARYPTRNPAE

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U375560	Nicotiana tabacum #1

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