Sol Genomics Network

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Unigene SGN-U579403

Unigene Basic Information

Unigene ID:	SGN-U579403
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2362 bp

>SGN-U579403 Tomato 200607 #2 (96 members)
CGGTGGATGAGTCGCCGAATGTTCCGATTAGGCTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGG
AATATAGGAGGAGGAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGGTGGTGAAGAGAGGAACGGGGTTTTGGGTATTG
GTAATCAGTCAAGTTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCT
CTGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTT
GTGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGAAGGTG
CGTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGG
TACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGAATGTTGCATATGTCTTACCTCGTACG
AGGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTC
CACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAGGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAG
CCACTTATGGAAGCTTGAAACACTACTTGCTAAATCCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCATGTTCGC
TTAGCATATTGAGATCTTCTCTGTAGTGAATCGTCTTCTGTGATTAAAAAAAATGTAGCACCCCGCGAAGAATTAAAAACGAAGAAGAGT
TGGTCCTTCCCCCCAGCTCATGTAAATTATCTTTGGTTCCATTTGTTTCCAATAGGTATACAGGATCCAACTCTTGTAAGTATATGCTAT
TTTCTTGTGTGTGGTTTATGTCCAGTTTTACTGTGCTCTTTTCTCTAAGAAAACAGAAAAGTGGGTGATAATTTGATATCTAAGTTTTAC
TCAATTTGTTAATTATGAGCTTTGCAATTTTGTTTTCATTGTTCTTCTCTTTGGAATTCTCCAGAAGCCGGAGTTTCACCGGAGAATAAG
AAATGGCGTTTATAGCTCGAAATGCGAAACTACTCACAGGAACGGCGCCGTTCCTTCAAAGGGCGGCGACGATCCACACGACACTTCCAT
CTCTCTCGCAGCAACCTGCCTCTTCTCCGGCCACTTACGGTGGCGCACAGCCTCCGTCCATGAATACACCAGCAGGGATATCTAAACCGG
CTGAGTATGTTATATCTAAGGTGGACGATCTGATGAATTGGGCTCGTCGTGGGTCCATATGGCCCATGACTTTTGGATTGGCTTGTTGCG
CTGTGGAAATGATGCACGCCGGAGCTGCACGTTACGATTTTGATCGATTCGGTATTATTTTCAGACCTAGCCCTAGGCAATCTGATGTTA
TGATTGTTGCTGGTACACTTACCAACAAAATGGCCCCTGCTCTTCGCAAGGTCTATGATCAAATGCCTGAGCCAAGGTGGGTCATCTCCA
TGGGGAGCTGTGCAAACGGTGGAGGGTACTACCATTACTCGTATGCTGTCGTGCGAGGCTGTGACAGGATCGTCCCTGTTGACATTTATG
TTCCAGGTTGCCCACCTACTGCCGAGGCTCTTCTGTACGGAATTCTTCAATTGCAGAAGAAGATAAATAGGCGCAAAGATTTGCTTATGT
GGTGGACCCAATAAGAGCCTTGTTTTTACGTTTCCATCGATCTGTATGGAAATAAACGTTTGTTGAAGTACCATCCAAGGAAGAGAGATC
TTCTTGTTTTTCTTTTGGGTGAATCTTTTGTATCTCTCTGCTGGACCTTCTATGTTTCTTTTGTATGTTAATCTGATGTTTAGTGGTGCT
GTCTAAGCTTAAGTTGGTATATTTCAATAAAGCTGCTGTGCATCCTCTAAAACTGGGGAATGGATTCAGATATTTTGATTGTGAAGTGTA
ATTGATAGATTGAGAAGTCTTGTGCATCTAATCATATCACATAGGAGGAGGGCCCGAAGCACATTTCGCCTTAAAATGCAACTTATAAAA
TTTTTCTTTTTTGTCTTAATTCCAACAAACTCTTTGTGTCTTGTACTATTCGGTTTATGTTTTGGATTTATGAGTACCTAATTATATGAT
AATGATTTGGTGCTTTGTTTGT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ss5	Tomato RuBP carboxylase small subunit

Genomic locations (0)

None

Library representation (31)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	11
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	9
Solanum lycopersicum	LePU	Pericarp Turning stage of fruit ripening.	1542	2
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	4
Solanum lycopersicum	Sl_RootN	Roots 5 weeks	165	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	6
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (96)

Alignment image suppressed for unigene with 96 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U314730	Tomato 200607 #1
SGN-U338986	Tomato 200607 #1
SGN-U338987	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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