Sol Genomics Network

Unigene SGN-U580634

Unigene Basic Information

Unigene ID:	SGN-U580634
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1971 bp

>SGN-U580634 Tomato 200607 #2 (415 members)
GGGCGATTGGCGGCCAAATCGGCCGAATTCCCAAGCGGCCGAGGTGGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTC
AAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG
AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGC
CTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAA
GGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTG
CAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGC
TGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGC
CCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAA
TGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCT
TAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTAT
TGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTT
CTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCG
TAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGA
CAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAG
AAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAA
GCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCT
TTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAG
AAAAAGAAATATTATTATATACTTGAAAATTAGTGCAAAAAAAAAAATGACAAATTATGCATGCGTGGGGGGGGGCGCGCATACCCCTTG
CCCCCCGGAGGAGGTGGTTAAAAAAGACAGATGCTTAAGAGAAAGGTCAAGTGGTGGCCCAGGTTTATGGTTTCTCCCAAGTGTGAAGGG
AGAAGAAATCACATTTGCTGCACATGGGAATGAAGCTCTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTT
TGTTTACTTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGCTCATTTTTTCGTGCCACAACACA
ATCTTGTATCACTTATAAATTAGTTCCTAACCGCACAATGATTTTTTTTTTTTTGAATCGTTAACAATTTTTAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
sam	S-adenosyl-L-methionine synthetase

Genomic locations (0)

None

Library representation (41)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	10
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	43
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	12
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	27
Solanum lycopersicum	LA	Leaf Mature leaves	6589	11
Solanum lycopersicum	LC	Leaf Mature leaves	5712	4
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	2
Solanum lycopersicum	LeMiToFr02	fruit	18697	6
Solanum lycopersicum	LeMiToLf01	leaf	30679	12
Solanum lycopersicum	LePS	root 5 weeks old plants	823	4
Solanum lycopersicum	LePU	Pericarp Turning stage of fruit ripening.	1542	1
Solanum lycopersicum	LeTransC6	leaf 1.5-month old plants	150	2
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	8
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	21
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	40
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	13
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	36
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	10
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	6
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	33
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	16
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	13
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	10
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	10
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	4
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	15

mRNA member sequences (415)

Alignment image suppressed for unigene with 415 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U312526	Tomato 200607 #1
SGN-U312527	Tomato 200607 #1
SGN-U333627	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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