Sol Genomics Network

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Unigene SGN-U580870

Unigene Basic Information

Unigene ID:	SGN-U580870
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1375 bp

>SGN-U580870 Tomato 200607 #2 (302 members)
CACTTGTAGTGTCAACATCCCTTACAAGATCAGCCCCTCTACTGACTGCTCTAAAGTTCAGTAAAGCTGATCATCAGAATTTGGTTTCAT
GAGGAGAATTAAGAATAATCTCACTTCTCATCATCAACTCGACCTCAATTTTTTTTACCTCTTGCCAGCGACACCGTTTAGCTACAAATG
GCTGCAGCTACCTCTCTATACGTCTCCGAGATGCTCGGAAGTCCGGTCAAGTTTAGCGGTGTTGCAAGGCCTGCTGCTCCATCTCCATCC
TCCTCTGCTACCTTCAAAACTGTTGCCCTTTTCAAAAAGAAGGCGGCTGCAGCTCCTGCCAAAGCTAAGGCTGCCGCTGTCTCCCCTGCT
GACGATGAGCTCGCCAAGTGGTACGGACCTGACAGAAGAATTTTCCTGCCCGAGGGTCTATTGGACAGATCAGAAATCCCCGAGTACTTG
AACGGAGAAGTTCCCGGAGACTACGGTTACGATCCTTTTGGTTTGAGCAAGAAGCCAGAAGACTTCGCCAAATATCAGGCATATGAGCTG
ATCCACGCCAGATGGGCTATGCTCGGTGCTGCTGGGTTTATTATCCCAGAAGCCTTCAACAAATTTGGTGCCAACTGTGGTCCTGAAGCT
GTTTGGTTCAAGACTGGAGCTTTACTTCTAGACGGAAACACATTGAATTACTTCGGAAAGAACATTCCCATCAACCTTATTCTTGCTGTC
GTCGCAGAGGTTGTTCTTGTTGGTGGTGCTGAGTACTACAGAATTATTAATGGCTTGGATTTGGAGGACAAGCTACACCCAGGTGGTCCA
TTTGACCCACTAGGCCTAGCAAAGGACCCAGACCAGGCAGCAATCTTGAAGGTAAAAGAAATCAAGAATGGAAGACTAGCCATGTTTTCT
ATGCTTGGTTTCTTCATCCAAGCCTATGTGACCGGACAGGGTCCTGTTGAGAATTTGGCTGCCCATTTGAGTGACCCCTTTGGCAACAAC
TTGCTCACCGTCATCGGTGGTGCTTCTGAAAGAGTCCCAACCCTGTAATTTTCTTTTTGGCCTGGAGGAATTGTACAATTCTGCAATACA
TTTCAGAGCTGTATGTGAAAAACCAGCTTGTAGTTTATGAAGACAAACTGTACTTATTCTCATACAGCTACTACTCTGGCCACATTCGTC
CTTCATTCCAATTTATGCAGTAACATTATTTTTTTATGAGTATAACTTATATATATCGTCATTATTTCTAAAGAAAAACACGTAATCATA
TTCACAATGTGATTTGCCCGAGTCTAGATGATGAAAAATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGA
GTCTGGTACGACGAGTCCGGACTAT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
psr5	LEY14339 proteasome, alpha subunit

Genomic locations (0)

None

Library representation (33)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	10
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	17
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	36
Solanum lycopersicum	LB	Leaf Mature leaves	3316	10
Solanum lycopersicum	LC	Leaf Mature leaves	5712	12
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	1
Solanum lycopersicum	LeCfAFLP	Seedling	190	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	2
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	1
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	14
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	27
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	28
Solanum lycopersicum	cLES	leaf 4 weeks	5243	15
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	51
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	9
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	23
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	4

mRNA member sequences (302)

Alignment image suppressed for unigene with 302 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (11)

Annotations (manual: 5 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U312444	Tomato 200607 #1
SGN-U312449	Tomato 200607 #1
SGN-U333688	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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