Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577617, SGN-U580870, and SGN-U581550 in the current build, Tomato 200607 #2

Unigene SGN-U312444

Unigene Basic Information

Unigene ID:	SGN-U312444
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312444
mRNA sequence:	Length: 1749 bp

>SGN-U312444 Tomato 200607 #1 (51 members)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAGAATAAGTACAGTTTGGTCTTCATAAACTACAAGCTGGTTTTTCACATACAG
CTCTGAAATGTATTGCAGAATTGTACAATTCCTCCAGGCCAAAAAGAAAATTACAGGGTTGGGACTCTTTCAGAAGCACCACCGATGACG
GTGAGCAAGTTGTTGCCAAAGGGGTCACTCAAATGGGCAGCCAAATTCTCAACAGGACCCTGTCCGGTCACATAGGCTTGGATGAAGAAA
CCAAGCATAGAAAACATGGCTAGTCTTCCATTCTTGATTTCTTTTACCTTCAAGATTGCTGCCTGGTCTGGGTCCTTTGCTAGGCCTAGT
GGGTCAAATGGACCACCTGGGTGTAGCTTGTCCTCCAAATCCAAGCCATTAATAATTCTGTAGTACTCAGCACCACCAACAAGAACAACC
TCTGCGACGACAGCAAGAATAAGGTTGATGGGAATGTTCTTTCCCAAGTAATTCAATGTGTTTCCGTCTAGAAGTAAAGCTCCAGTCTTG
AAGGGAAGAGCTTTCAACACTCAAGAGATCGGAAGAAACTGAAATCACACAGAGCCCAAATTTTTCAATAGCTTTTAGTACTATCAGATA
ATGGCTAGATACGACAGAGCGATCACCGTTTTCTCGCCGGACGGCCACTTATTCCAAGTGGAGTACGCCATGGAAGCCGTACGCAAAGGA
AACGCCGCCGTCGGTGTACGTGGAACTGACACTGTTGTCCTCGGCGTCGAGAAGAAGTCCACTCCCAAGCTTCAAGACTCCAGGTCAGTA
AGAAAGATAGTGAATCTAGATGATCACATTGCGTTGGCGTGTGCTGGGCTGAAAGCAGATGCACGAGTTCTTGTGAATAAAGCACGCATT
GAGTGTCAGAGTCATAGGCTTACAGTTGAAGATCCTGTTACTGTTGAGTACATAACTCGTTACATTGCTGGTCTTCAGCAAAAGTACACC
CAAAGTGGTGGGGTGAGGCCATTTGGTCTATCCACCTTGATCATTGGTTTTGACCCACACACAGGTGTCCCCTCACTTTACCAAACAGAT
CCATCAGGTACATTCTCAGCTTGGAAAGCCAATGCGACTGGTAGAAACTCCAACTCTACTCGGGAATTCTTGGAGAAGAATTACAAAGAA
ACATCTGGCCAGGAAACTGTGAAACTAGCAATACGTGCATTGCTTGAAGTTGTTGAAAGTGGTGGAAAAAACATAGAAGTTGCTGTGATG
ACAAAAGAGCATGGGCTTAAGCAACTTGAGGAAGCTGAAATTGATGCCATTGTTGCTGAGATCGAAGCAGAGAAAGCTGCTGCAGAAGCA
GCCAAAAAGGCCCCACCGAAGGAAACCTAGTTGAGCTGAAATTTGTTCTTAACTATCCCTGAATCCTTTCTTTTTTCGGTTCAAGCCAAG
TGCAGTGTTATTTGAATTTTAAGATTTTGGTCCGTCTAAAACTTTTACCTTTGTTAAAATTATGGGACTAAAAATGTCATGCACTCATGC
ACTCGCGATCTCTGCCCTACTTGTGTGTTGCTTGATATTTTAAAGTTTTATCATGTTATTTGGTAGTTCTTGTAGTTTGAAAATTTGGTT
GTGAAATATCGACATTTGTTACTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAATTGGGGGGGGGGGGGGGGGCCCCCTTCCCCCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
psr5	LEY14339 proteasome, alpha subunit

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTSB	seed	1880	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	5

mRNA member sequences (51)

Alignment image suppressed for unigene with 51 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 3 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101456	20S proteasome A and B subunits - Molecular Function: threonine endopeptidase activity (GO:0004298) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	138
2	118543	20S proteasome A and B subunits - Molecular Function: threonine endopeptidase activity (GO:0004298) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511) Proteasome alpha-subunit - Molecular Function: endopeptidase activity (GO:0004175) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	58
5	130743	20S proteasome A and B subunits - Molecular Function: threonine endopeptidase activity (GO:0004298) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511) Proteasome alpha-subunit - Molecular Function: endopeptidase activity (GO:0004175) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U214388	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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