Sol Genomics Network

Unigene SGN-U578351

Unigene Basic Information

Unigene ID:	SGN-U578351
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1396 bp

>SGN-U578351 Tomato 200607 #2 (195 members)
GGCGATTGGCGGCCAATCGGCCGAATTAAAAGATCTCCTTTTTTTCTTCTCTACTCTTCTAATGGATCGTCTTTTTCTCTTATCTTTTCT
CGCTTTCGCTCTTTTCTCGTCGGCGATTGCTTTCTCCGACGACGATCCGTTGATCCGACAAGTTGTATCGGGAAACGATGACAACCATAT
GTTAAACGCCGAGCATCACTTTTCACTTTTTAAGGCTAAGTTTGGAAAGATCTATGCTTCTCAGGAGGAACATGACCATAGATTGAAGGT
ATTCAAGGCTAATCTTCACCGTGCGAAGCGTCACCAGCTCCTTGACCCTTCCGCTGAGCACGGTATTACGCAGTTCTCCGATTTGACTCC
GTCGGAGTTTCGCCGGACTTACCTTGGACTTAACAAGCCCCGACCTAATCTTAATGCCGAGAAAGCTCCAATCCTCCCGACTAAAGATCT
TCCATCTGATTTTGACTGGCGTGAAAAAGGAGCCGTCACCGATGTTAAAAATCAGGGCTCATGTGGATCATGCTGGTCATTCAGTACGAC
TGGAGCAGTGGAGGGAGCTCACTTTTTGGCGACCGGAGAGCTTGTGAGCCTTAGTGAACAGCAGCTTGTGGATTGTGACCATGAGTGTGA
CCCGGTGGAAAAAAATGATTGTGATGCAGGTTGCAACGGTGGTCTTATGACTACTGCCTTCGAGTATACCCTTAAGGCTGGAGGTCTCCA
ACTGGAGAAAGACTATCCTTACACTGGCAGGAATGGCAAATGCCACTTTGACAAGAGCAGAATTGCTGCCTCTGTATCCAACTTCAGTGT
TGTTGGTCTTGATGAAGACCAAATTGCTGCTAACCTGCTGAAACATGGTCCTCTTGCAGTGGGGATCAATGCTGCTTGGATGCAGACATA
TGTTAGAGGAGTTTCATGCCCATTAATTTGCTTCAAGCGTCAGGATCATGGTGTCCTCCTAGTCGGTTATGGATCTGAAGGTTTTGCACC
TATACGTCTCAAGAATAAGCCTTACTGGATCATCAAGAATTCTTGGGGAAAGACTTGGGGAGAACACGGATATTACAAGATCTGCAGGGG
TCACAATATCTGCGGAGTTGATGCCATGGTCTCTACTGTGACTGCCACACATACTACTAATCCTAATCTTTAAGATGAAATATATCCCAA
GAATGTTGTCTGTAATCAGCGATTTTACTGCCATTACCCTAATCTTTGTAAATATATTGGTCAGTAATGTATTGTGAACTCATGTCTTGG
ATTTCATCAGCACCTTATTATCGTGCCTCAAACCATGTACTGGGATTTGTATCTGTAGTTTTATACTGCAAATAATTGGAGTTTGAATTT
TTAAGTTATTTGCAATATTTTGAATGCTCGAAATGTCTCTTAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Z14028	pre-pro-cysteine proteinase

Genomic locations (0)

None

Library representation (40)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	11
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	13
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	1
Solanum lycopersicum	LeMiToLf01	leaf	30679	6
Solanum lycopersicum	LePU	Pericarp Turning stage of fruit ripening.	1542	2
Solanum lycopersicum	LeTransC6	leaf 1.5-month old plants	150	2
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	9
Solanum lycopersicum	Sl_LeafCherry01	epidermis	226	1
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	19
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	21
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	7
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	7
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSB	seed	1880	4
Solanum lycopersicum	cTSC	seed	2256	3
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (195)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (5)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312809	Tomato 200607 #1
SGN-U312810	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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