EST details — SGN-E395644

Search information 
Request: 395644Match: SGN-E395644
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173868Clone name: TUS-17-E2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173868 is on microarray TOM1 spot ID 1-1-7.1.18.20 [Order] [Tomato Microarray Database]
See unigene SGN-U579408 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C5755 [cLEC-32-O6] Trace: SGN-T29994 EST: SGN-E207781 Direction: 5' Facility: TIGR
Clone: SGN-C173868 [TUS-17-E2] Trace: SGN-T196971 EST: SGN-E395645 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E395644Length: 591 bp (867 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395644 [] (trimmed) AACACGTGATAAATTAGGTGATTTTTTCCTCATTCATTCCTGTTCATACAATCAAATCAGCATTCATACTCCACTATACTAAATACCATTAGTAT
TTCCCTAAAACAATAATGTAAATACAACATTCAGTACATTAATCAAAAGCTAATTAAACACGCCAAATTAAAGCTTAATTAATATCCCTCCTTTG
TTTTCTCAATTTATTGCCATGATAAAATGGAAATTGAACTTTCACACATTTATTGTGCCTTCAACTATGACAATGCGGCAGTATCAGTCAAATGT
CCTGTTTAATATCCTTGATTTAGGTTGAAGGACACTTGAAGTCTTTGGGTGGATACTTGCCACAATCATCAATAAGAACCTGTAGAGCAATGGGA
AGAATGATGTTTATGTTTAAGAGCTTGAGTCTAATAGTTGTGCAAAGACAAATGGCTGCATCCAAGTCTACTAGTCCTCCTAGAAGTGGACAACA
TGTTTGCTTAGCACTTCCACCGATTCCAATGTGGATTAGTCCTCCTAACACGTCCACACAAGCACCTAGCTTGAGAGCATCAATGGGGCAAGTTG
GTTGGGCTGGTGGTGAAGGAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395644] SGN-U579408 Tomato 200607 Build 2 115 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196970 [Download][View] Facility Assigned ID: FA0AAD5BC01FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.951 Expected Error Rate: 0.0053 Quality Trim Threshold: 14.5