Sol Genomics Network

Unigene SGN-U579408

Unigene Basic Information

Unigene ID:	SGN-U579408
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1639 bp

>SGN-U579408 Tomato 200607 #2 (115 members)
CCGTTAATTCCTAAACATTTTCTATAAAATAACACTAAATCTTCAATTATACATATTACATACCTAACTCAAGCATCTTGTCGGTAAAAA
TCATTAGAAAAGAATTGGAAATAGGGAAATAAATAGACATATTTTGGTTAGTATCTTTGTCTATAAGAATGGGTGTGTTAAAGAGCTAGT
GCCATAGTGTACCATTCTATTGGTAGCATTTGGCAAGAGTTATTCCCTCTCTCCATACCAATGGAGAAGTTTAATCTTGCTAGAGTCTTA
TTGTTGCTTCTTCAACTTGGAACTTTGTTCATTGCCCATGCATGTCCTTATTGTCCATATCCTCCTTCCACCCCAAAACACCCAAAATTG
CCTCCTAAGGTGAAACCACCCTCTACACAACCTCCACATGTGAAACCACCTTCTACCCCTAAACACCCTAAAGATCCTCCACATGTGAAG
CCACCTTCTACCCCTAAACAACCACCATATGTGAAACCACCTACTACCCCTAAACACCCTCCACATGTTAAACCACCTTCCACCCCTAAA
CACCCTAAACACCCCCCACAAAAACCATGCCCTCCTCCATCTCATCATGGTCCTAAGCCACCAATTGTAAAACCTCCACATGTACCAAGA
CCTCCTATAGTGCATCCTCCTCCCATTGTCTCTCCACCTTCCACACCTAAACCACCAAAAACACCACCATTCACTCCAAAACCACCATCA
CCAATACCACCTATTGTTTCACCCCCTATTGTTTATCCACCAATCACTCCAACACCACCTATTGTCCATCCACCAGTCACTCCAAAACCA
CCATCACCAACACCTCCTATTGTTTCACCCCCCATTGTTTATCCACCAATCACTCCAACACCACCTGTTGTGTCACCTCCAATCATTCCA
ACACCACCTATTGTCTCTCCACCTTTTGTCCCCAATCCTCCCGTGGTAATACCACCACCCTACGTGCCAAGTCCTCCGGTTGTTACTCCA
CCCATAGTTCCAACACCCCCTACACCATGCCCACCACCACCACCACCACCAGCAATAATACCATCACCACCAGCACAACCAACTTGCCCC
ATTGATGCTCTCAAGCTAGGTGCTTGTGTGGACGTGTTAGGAGGACTAATCCACATTGGAATCGGTGGAAGTGCTAAGCAAACATGTTGT
CCACTTCTAGGAGGACTAGTAGACTTGGATGCAGCCATTTGTCTTTGCACAACTATTAGACTCAAGCTCTTAAACATAAACATCATTCTT
CCCATTGCTCTACAGGTTCTTATTGATGATTGTGGCAAGTATCCACCCAAAGACTTCAAGTGTCCTTCAACCTAAATCAAGGATATTAAA
CAGGACATTTGACTGATACTGCCGCATTGTCATAGTTGAAGGCACAATAAATGTGTGAAAGTTCAATTTCCATTTTATCATGGCAATAAA
TTGAGAAAACAAAGGAGGGATATTAATTAAGCTTTAATTTGGCGTGTTTAATTAGCTTTTGATTAATGTACTGAATGTTGTATTTACATT
ATTGTTTTAGGGAAATACTAATGGTATTTAGTATAGTGGAGTATGAATGCTGATTTGATTGTATGAACACGAATGAATGAGGAAAAAATC
ACCTAATTTATCACGTGTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tprpf1	proline-rich protein

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	15
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	19
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	22
Solanum lycopersicum	cTSB	seed	1880	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	10

mRNA member sequences (115)

Alignment image suppressed for unigene with 115 aligned sequences.
[Show Image]

Markers Information (1)

Expression Data (15)

Annotations (manual: 4 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U313124	Tomato 200607 #1
SGN-U313125	Tomato 200607 #1
SGN-U313126	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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