Clone Read LE_HBa0108K06_T7_96107

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108K06_T7_96107
Primer
T7
ID from Seq. Facility
LE_HBa_108_K06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
727 trimmed for vector and quality, 824 raw
Genbank Accession
DU057237
Sequence
>LE_HBa0108K06_T7_96107 (raw untrimmed)
ACTCGGTACCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTGCCAATGAAAAGAACAACATCTTCAAATTTTCAGTATTTCTATTGAAAT
TCTTCAAAACATTGACTGATAAATGCCATATGCATGCATAATGTTCTGATTCAGGATATACATTTGTTGTCCCTTTCCATATGCTTTCATTTCTGTCTGA
CATAAAACACATATTTTGTCTAACTCCATATGCTTCTCTAAATTGCTCAAAGAACCATGTCCATGAAGCATCATTTTCAGAATCTACTATCGCATACGCC
AACGGAAGTATATGACCTGCTCATTAATTTTTTTAAAAAATATCACACAAATAAAAAATATCATTCATATACTTTTTCATTATATTATATAATTAGAAAA
TTATATAGGCTAATATTTTACCTCCCGGATCCAATGTGCTTGCAGTTAACATTGTACCACCATATGAACATTTTAATGCAGCGCCATCAACAACCACAAT
TGGCCTACAATATTCCCAGCCCCTAATACATGCTTCTGAAGCAACAAATGCATATAAAAATGTATCATCTTCATTCCTTTTTATTTTCAAAACAGATCCT
GGATATGTTTGCTCCAAAATGTAAAAATAACCTGAAAATAACAGTCCAATTCATACATAAAAAATACGTAGTTCATACATAAAAAATACACATAACTGTT
ACTGTATAAATTTATTTTGAAATTACCTGAAAATAACAGCTCAATTCATACTTAAAAAATACATATCTTATACATAATAAATACACCAAACTGTTAATAC
CCAACAAAATAAAACAGTATTTAT
>LE_HBa0108K06_T7_96107 (trimmed for quality and cloning vector)
AGCTTTTGCCAATGAAAAGAACAACATCTTCAAATTTTCAGTATTTCTATTGAAATTCTTCAAAACATTGACTGATAAATGCCATATGCATGCATAATGT
TCTGATTCAGGATATACATTTGTTGTCCCTTTCCATATGCTTTCATTTCTGTCTGACATAAAACACATATTTTGTCTAACTCCATATGCTTCTCTAAATT
GCTCAAAGAACCATGTCCATGAAGCATCATTTTCAGAATCTACTATCGCATACGCCAACGGAAGTATATGACCTGCTCATTAATTTTTTTAAAAAATATC
ACACAAATAAAAAATATCATTCATATACTTTTTCATTATATTATATAATTAGAAAATTATATAGGCTAATATTTTACCTCCCGGATCCAATGTGCTTGCA
GTTAACATTGTACCACCATATGAACATTTTAATGCAGCGCCATCAACAACCACAATTGGCCTACAATATTCCCAGCCCCTAATACATGCTTCTGAAGCAA
CAAATGCATATAAAAATGTATCATCTTCATTCCTTTTTATTTTCAAAACAGATCCTGGATATGTTTGCTCCAAAATGTAAAAATAACCTGAAAATAACAG
TCCAATTCATACATAAAAAATACGTAGTTCATACATAAAAAATACACATAACTGTTACTGTATAAATTTATTTTGAAATTACCTGAAAATAACAGCTCAA
TTCATACTTAAAAAATACATATCTTAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.910582
Expected error %
0.184661
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31178.1| Score 180 E Value 3e-44 Identity 20.70% Align. Length 434bp (59.70%) Frame 2
putative transposase [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB51203.1| Score 116 E Value 5e-25 Identity 11.20% Align. Length 599bp (82.39%) Frame 2
putative protein [Arabidopsis thaliana] pir||T12986 hypothetical protein T21L8.60 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108K06
Clone
Clone name
hba-108k6
LE_HBa0108K06
P108K06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found