Clone Read LE_HBa0108K06_SP6_96106

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0108K06_SP6_96106
Primer
SP6
ID from Seq. Facility
LE_HBa_108_K06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
423 trimmed for vector and quality, 833 raw
Sequence
>LE_HBa0108K06_SP6_96106 (raw untrimmed)
ATTTCGGTNTTTTTCCAGTATCTANNNTNTNTNNNNNNNNNNNNNNNNTNNNNANNTTTTNNNATTTNTTATNNANTTNTTACCTTTATNTTNCNNCTNA
TNNATANTCTNTTNCAATAAATTAACATTATATTACCACATATNTATCTNCTNTTNCNCAACATATACATCTTATNTANCAACANATNCATCATATNTTN
ACACATCTATACANATTATTNCAACATTTNAATTTTATNTNACAACAAATNACCAACATATCACTAAAATATANTAACATACACTAAATATATTTTAAAT
ACCTNAACAACACTATATCTCTAAAATCATATCAACAAAATNNCCAAAAAAAACAACAACAACAAAAAATCACTTTTCACTCAATAATAACATTACANTA
CATTTTCTCAAAATAAAAATTTTTTNAATTNACTNATTTTCTTTCAAAAATAATAAATAATACACACCATTAANTCAATTATTCATTTTCTACATCTACA
NAACATTTTATTNTTCATTAATTCAAAAAAAAAAACTTTNAAAATTCTAAATTATTTCAAAAAAATAACTTACTCATTTCTANTCNAACTCTATTATANT
TCAAAAAAATAATANANTAATTNANCACTTNAAACAAAAANTAACAACTTCTAATNAAAATTAACTACTTATTTCCTAATTTCTAANNAACAAAATTAAA
AATCCCCCAATCCATAAACAAAAAAAAAAATATAACACAAAAAAAAAAATCCAACTATTTTTTCTTTTAACTAATTTTTTTTTAATTATAAAAATTTCCC
TTTTTTTTTATTTTAAAAAAAAATAAAAAAATT
>LE_HBa0108K06_SP6_96106 (trimmed for quality and cloning vector)
CAACATATACATCTTATNTANCAACANATNCATCATATNTTNACACATCTATACANATTATTNCAACATTTNAATTTTATNTNACAACAAATNACCAACA
TATCACTAAAATATANTAACATACACTAAATATATTTTAAATACCTNAACAACACTATATCTCTAAAATCATATCAACAAAATNNCCAAAAAAAACAACA
ACAACAAAAAATCACTTTTCACTCAATAATAACATTACANTACATTTTCTCAAAATAAAAATTTTTTNAATTNACTNATTTTCTTTCAAAAATAATAAAT
AATACACACCATTAANTCAATTATTCATTTTCTACATCTACANAACATTTTATTNTTCATTAATTCAAAAAAAAAAACTTTNAAAATTCTAAATTATTTC
AAAAAAATAACTTACTCATTTCT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.842857
Expected error %
12.3264
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0108K06
Clone
Clone name
hba-108k6
LE_HBa0108K06
P108K06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found