Clone Read LE_HBa0046L21_SP6_94648

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0046L21_SP6_94648
Primer
SP6
ID from Seq. Facility
LE_HBa_046_L21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
616 trimmed for vector and quality, 766 raw
Genbank Accession
DU056211
Sequence
>LE_HBa0046L21_SP6_94648 (raw untrimmed)
GGGAAAGGGAAGAGCTTGCTCAAATACGACACGCCAAAGATACTATCTTGTAATTAGTCCCTAACCTGTTCCTTAATAGGATGAATGATTTATTTTGCTG
ATCAATACCTATTGTGCAGTTCTTTTAACTAGTGATGAATGCTTAATAAACCAATGTAAATATTGTGTACATTGCAGAGGACAAATTTGCCTGGTTACGA
GATGATGAATTTGCTCGACAAGCAATAGCAGGAGTGAACCCAGTGTCTATCGAAAAGCTTCAGGTTTTTCCACCAGTAAGCAAGCTTGATCCTGAAATCT
ATGGCCCTCAAGAATCCGCCCTCAAGGAGGAGCACATTCTTGGTCATCTCAATGGCATGACTGTTCAAGAGGTAATTAAACACAATTGGATTTCACTTAT
ACGAACAATATATATTAGTTTACGTTATCAGTATATTTTAACTTACTGTCAAACTAATCAAAAATGTTCATTTCCTGATGTGACAGGCTTTGGATGCAAA
TAAGCTTTTCATTCTGGATCATCATGATGTATATCTACCATTTCTCGATCGGATCAATGCACTTGATGGCCGCAAAGCATATGCAACACGCCCCATTTAT
TTCTTTGTCTGATGTTGGCACACTTAAAGCCCATTGCCATTGAACTTAGCCCTCCCCCAGACTGGTCCAAGTTCACCGATCCAAACGTGTTGGTCACCTC
CGCCTGTTTGGTGCCACTGGTAACGGGATGTGGCAAATCGCTAAAGCACACCTCTTGGCTAATGTT
>LE_HBa0046L21_SP6_94648 (trimmed for quality and cloning vector)
CAAATACGACACGCCAAAGATACTATCTTGTAATTAGTCCCTAACCTGTTCCTTAATAGGATGAATGATTTATTTTGCTGATCAATACCTATTGTGCAGT
TCTTTTAACTAGTGATGAATGCTTAATAAACCAATGTAAATATTGTGTACATTGCAGAGGACAAATTTGCCTGGTTACGAGATGATGAATTTGCTCGACA
AGCAATAGCAGGAGTGAACCCAGTGTCTATCGAAAAGCTTCAGGTTTTTCCACCAGTAAGCAAGCTTGATCCTGAAATCTATGGCCCTCAAGAATCCGCC
CTCAAGGAGGAGCACATTCTTGGTCATCTCAATGGCATGACTGTTCAAGAGGTAATTAAACACAATTGGATTTCACTTATACGAACAATATATATTAGTT
TACGTTATCAGTATATTTTAACTTACTGTCAAACTAATCAAAAATGTTCATTTCCTGATGTGACAGGCTTTGGATGCAAATAAGCTTTTCATTCTGGATC
ATCATGATGTATATCTACCATTTCTCGATCGGATCAATGCACTTGATGGCCGCAAAGCATATGCAACACGCCCCATTTATTTCTTTGTCTGATGTTGGCA
CACTTAAAGCCCATTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963027
Expected error %
0.530298
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g17420.1 Score 110 E Value 1e-25 Identity 61.00% Align. Length 581bp (94.32%) Frame 3
68414.m02128 lipoxygenase, putative similar to lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140 [Lycopersicon esculentum]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g72520.1 Score 105 E Value 3e-23 Identity 61.00% Align. Length 432bp (70.13%) Frame 2
68414.m08386 lipoxygenase, putative similar to lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140 [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB65767.1| Score 137 E Value 9e-32 Identity 84.40% Align. Length 581bp (94.32%) Frame 3
lipoxygenase pir||T07409 lipoxygenase (EC 1.13.11.12) loxD - tomato
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA65269.1| Score 135 E Value 2e-31 Identity 83.10% Align. Length 581bp (94.32%) Frame 3
13-lipoxygenase [Solanum tuberosum] pir||T07065 probable lipoxygenase (EC 1.13.11.12) (clone H3) - potato
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0046L21
Clone
Clone name
hba-46l21
LE_HBa0046L21
P046L21
Clone type
BAC
Contamination
none
Estimated length
113,005
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found