Clone Read LE_HBa0047L21_SP6_9400

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0047L21_SP6_9400
Primer
SP6
ID from Seq. Facility
LE_HBa_047_L21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
719 trimmed for vector and quality, 871 raw
Genbank Accession
DU028478
Sequence
>LE_HBa0047L21_SP6_9400 (raw untrimmed)
CCCCTTCGATGTGTACGCNCANANGANGGAANNATATGTTGAGTAAAGTAGAGAAAATTCATACCAATTAGGAGTACCATATACTCTCGTAGATTGTCGA
GTAGGCTCAAGAGGACCACATCTTGAAGAATTCTCAAATTCTAATTGTGGTACAATTTCAGGCGGCAGATCAATGTCGGGAAAATATAAAGTTGGATGAC
GTTGTTCATACACAAATCTAGGTTTGAACCTGTTAAAATAAGATGATAAATTCTCAAAAGTAGGAAGAAGAGGAGAAACAGTAGATGAATCAACAATCAT
AGGAAAGAAATACTAATTCTTAAAGAAAACGACATTTCTGGAAATACGAAATTTGTGAGAACATGGATCATAGCAAATAAAACCTTTTTGTGAAGTAGTA
TAACCCATAAAAGCACATTTAGTAGACTGTACATAAATTTTATTGCATTATGAAGTAGACAAATGCACAAAACAAACATAACCAAATGTATGAAAATCAC
TATAGTTAGGATTTCGGTTATAAAGACGAAAATATGGATATTCAAGATTTGGCACTTTAGATGGAAATCTATTAATTAAATAGAAAACAGTAGACAAAGC
TTCCGCCCAATATTAGATAGTACAGAGGAATCGATCAAAAAAGCACGACCAACATTTAAAAGATGACAATTTTTTTCATTTAGCAACTCCATTTTAATGT
GGTGTATTTGGGAAAGAATGTTGTGAGACAATTCCTTTGTCAATCAAGAATTTTTTGGATTCAGAAGGCATACATTCTCCACCAAAATCAGAGCTTAATA
ATTTGACGCATGCAGAAAATTGAGTCTCAATGTAAGCCAAAAATATCTTGAACATGGAAAATGCCTCAGAT
>LE_HBa0047L21_SP6_9400 (trimmed for quality and cloning vector)
AAGTAGAGAAAATTCATACCAATTAGGAGTACCATATACTCTCGTAGATTGTCGAGTAGGCTCAAGAGGACCACATCTTGAAGAATTCTCAAATTCTAAT
TGTGGTACAATTTCAGGCGGCAGATCAATGTCGGGAAAATATAAAGTTGGATGACGTTGTTCATACACAAATCTAGGTTTGAACCTGTTAAAATAAGATG
ATAAATTCTCAAAAGTAGGAAGAAGAGGAGAAACAGTAGATGAATCAACAATCATAGGAAAGAAATACTAATTCTTAAAGAAAACGACATTTCTGGAAAT
ACGAAATTTGTGAGAACATGGATCATAGCAAATAAAACCTTTTTGTGAAGTAGTATAACCCATAAAAGCACATTTAGTAGACTGTACATAAATTTTATTG
CATTATGAAGTAGACAAATGCACAAAACAAACATAACCAAATGTATGAAAATCACTATAGTTAGGATTTCGGTTATAAAGACGAAAATATGGATATTCAA
GATTTGGCACTTTAGATGGAAATCTATTAATTAAATAGAAAACAGTAGACAAAGCTTCCGCCCAATATTAGATAGTACAGAGGAATCGATCAAAAAAGCA
CGACCAACATTTAAAAGATGACAATTTTTTTCATTTAGCAACTCCATTTTAATGTGGTGTATTTGGGAAAGAATGTTGTGAGACAATTCCTTTGTCAATC
AAGAATTTTTTGGATTCAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.926356
Expected error %
0.109879
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89779.1| Score 340 E Value 3e-92 Identity 23.90% Align. Length 710bp (98.75%) Frame 2
gag-pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK43485.1| Score 99 E Value 1e-19 Identity 10.20% Align. Length 599bp (83.31%) Frame 2
polyprotein, putative [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0047L21
Clone
Clone name
hba-47l21
LE_HBa0047L21
P047L21
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found