Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0149L15_T7_90029

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0149L15_T7_90029
Primer
T7
ID from Seq. Facility
LE_HBa_149_L15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
233 trimmed for vector and quality, 973 raw
Sequence
>LE_HBa0149L15_T7_90029 (raw untrimmed)
CCTGGGTCCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAAGTGTTGTTAGCATTCGAACTGCCATACTCGTACATTCAATGTACTAATGT
TAGTTGGCATGCATCGTATTATGATGCAAATGCAGGTAACTAGGATCAATATCCGGCACACCGTTGATCCAGTTGATCACTCCAAAATCAGTTAGTGAGC
CTCTTTGCACTCCGGAGGATATCCTTTATTGCTTTCTAGTTAGTTCAATAGGATGTTGTGGGGTTTGTCTCATCATTCATCTCAGTCGGTCTATCCGCTT
CATAGACAGATAGTAGGTTAGTAATCATTATATTTCATTCTAGTGTCAAAGACATTGGGTTTGTCTTTTAGTTGTTGTTTATTTGATATATTAGATTTTT
AATTTTTTACTGTGATTTTATTTAATGTTTTGTTATGATTTCTACTCTATCTTTATTTACTAATCATATATATCTTATTATTATTTTTTTTTATGTCTTC
CCCCATATTTCTTTTTTCTTCTTTTTTTCTAGGTCAATGCTTCTCCCCTCGTTTTTCTTCGTGTTTCTTTTTTTATAATTTTATTTTTCTCACTTCTATA
TTGATTTTCTCCTCATCATTTATTCATCTCTCTGTTTTAAACTCCTGTATTATTACTTTTATTTTATCTTCTTATATCTGTGTTATTTTTTTTGTTTTTC
TATCTGTTTGTTTTTTTATTTTTGGTTTTTTTTTGTTTCTTTTTGTTTGTTGCATTTTTGTATTTTTCTATTTTTTACTTTTCTTCTGTTTGATTATTTC
TTCTGCTAACATTATTTTTTTTTTTTTTAGTTTTTACTTTGCTGTTTTTGCTAGTACTTCTAGTAGTCTCTCATTCATTCTTAGCTCCGTAATGTTTTAT
ACTTGCATCGATTATGATATATTACTACCATTCTTTACTTCCTATAATTTGTACTAATAGATGTAGCTCTTAC
>LE_HBa0149L15_T7_90029 (trimmed for quality and cloning vector)
AGCTTAAGTGTTGTTAGCATTCGAACTGCCATACTCGTACATTCAATGTACTAATGTTAGTTGGCATGCATCGTATTATGATGCAAATGCAGGTAACTAG
GATCAATATCCGGCACACCGTTGATCCAGTTGATCACTCCAAAATCAGTTAGTGAGCCTCTTTGCACTCCGGAGGATATCCTTTATTGCTTTCTAGTTAG
TTCAATAGGATGTTGTGGGGTTTGTCTCATCAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.962686
Expected error %
0.220883
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38798.1| Score 77 E Value 1e-13 Identity 19.10% Align. Length 203bp (87.12%) Frame 1
hypothetical protein PGEC747E24.8 [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38768.1| Score 69 E Value 4e-11 Identity 20.80% Align. Length 158bp (67.81%) Frame 1
putative late blight resistance protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0149L15
Clone
Clone name
hba-149l15
LE_HBa0149L15
P149L15
Clone type
BAC
Contamination
none
Estimated length
98,026
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found