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Clone Read LE_HBa0149L15_SP6_90028

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0149L15_SP6_90028
Primer
SP6
ID from Seq. Facility
LE_HBa_149_L15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
587 trimmed for vector and quality, 853 raw
Sequence
>LE_HBa0149L15_SP6_90028 (raw untrimmed)
TTGATGTGCAGACACCTTCAGGTGGGTGCTGAATGATCACAAAATTAATGCCGAAGATAACTACGTGCTTCAAAAGGAATTTGAGGATCAAGAGATCTGG
GATTGTGTCAAACTCTGTGCTAGTGATAAAGCAACTGGTCCTGATGGTTTTACCATGGCCTTCTATACCCATTGTTGGGAGGCTATTGGAAAAGATGTGA
TTGCTACAATCAAGAACTTTCATGAGAGGTGCGTCTTTGAGAAAAGCTTCAACTCTTCCCATGTGGCTTTAATTCCAAAAAAAATTGGTGCTAAGGAGCT
CACTGACTTCAGACCCATTAGCCTAATTGGTAGCGTGTACAAGATCATCTCCAAAATTCTCACCAAAAGAATCAAAATGGTTATGCACAAACTGGTGGAC
CCCCAATAGTTGGTCATTATAAAAGGGAGACAAATAATGGATGCCATTCTTATGGCAAATAAGTGTGTTGATGCTAGAACTAGAAGCACGGTTCCGGGCA
TCCTTTGTAAGCTAGACATTCAAAAAGCTTATGACCATCTCAATTGGAAGTATCTGTTGGAGACTCTTTCTAAAAAAGGTTTTGGAGATAAATGGTTAAG
ATGGATGAAGTTTTTCATCAACTCTGTGAAATTCTCTGATTCTAATAAATGGCTCTCCCTACAGGTATTTTTCTCTTCCCATAGAGGTTTAAAGTAACTA
AACCTTTTTTCTCTCCAATCTTTTAATCTTTTTTCTTTAGGTACTAATATTCATTCCTTATATTTTATCTTACAAATACGGCTGTGTCTAAATGTTTCAT
GTATTACCCGCTCCTTCTTTGTCGTGTATCTTTTTATATCTTATCTTTTTTTT
>LE_HBa0149L15_SP6_90028 (trimmed for quality and cloning vector)
GTGGGTGCTGAATGATCACAAAATTAATGCCGAAGATAACTACGTGCTTCAAAAGGAATTTGAGGATCAAGAGATCTGGGATTGTGTCAAACTCTGTGCT
AGTGATAAAGCAACTGGTCCTGATGGTTTTACCATGGCCTTCTATACCCATTGTTGGGAGGCTATTGGAAAAGATGTGATTGCTACAATCAAGAACTTTC
ATGAGAGGTGCGTCTTTGAGAAAAGCTTCAACTCTTCCCATGTGGCTTTAATTCCAAAAAAAATTGGTGCTAAGGAGCTCACTGACTTCAGACCCATTAG
CCTAATTGGTAGCGTGTACAAGATCATCTCCAAAATTCTCACCAAAAGAATCAAAATGGTTATGCACAAACTGGTGGACCCCCAATAGTTGGTCATTATA
AAAGGGAGACAAATAATGGATGCCATTCTTATGGCAAATAAGTGTGTTGATGCTAGAACTAGAAGCACGGTTCCGGGCATCCTTTGTAAGCTAGACATTC
AAAAAGCTTATGACCATCTCAATTGGAAGTATCTGTTGGAGACTCTTTCTAAAAAAGGTTTTGGAGATAAATGGTTAAGATGGATGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956276
Expected error %
0.18671
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g43760.1 Score 66 E Value 1e-11 Identity 13.10% Align. Length 266bp (45.32%) Frame 3
68414.m05034 hypothetical protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_912454.1| Score 145 E Value 5e-34 Identity 13.80% Align. Length 551bp (93.87%) Frame 3
Putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] gb|AAO15295.1| Putative reverse transcriptase [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD41563.3| Score 145 E Value 7e-34 Identity 13.40% Align. Length 551bp (93.87%) Frame 3
OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0149L15
Clone
Clone name
hba-149l15
LE_HBa0149L15
P149L15
Clone type
BAC
Contamination
none
Estimated length
98,026
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found