Clone Read LE_HBa0120P13_SP6_87912

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0120P13_SP6_87912
Primer
SP6
ID from Seq. Facility
LE_HBa_120_P13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
727 trimmed for vector and quality, 855 raw
Sequence
>LE_HBa0120P13_SP6_87912 (raw untrimmed)
ATTGGGAGGGGCTGTTCTCCTCTGGTGGACGGCATGGTGTAATGCCAAGATCACGCGGAATGAGAATTGCTGCAGCTTTTGGATTGGCAATGGGGATTAC
AGCATTAGTATTGCTTTTGATGGGCATTGTTCGTTGGCGAAGGAAGCCAACAAAGGGTTGGGAGAAGCAGAAGACATTCTCTTCATGGCTTCCTCTCAAT
GCTAGTTACTGCAGCTTCATGTCAAGCAAGAGCAAGACTAGTTGTTCAACAATCATATCCTCTGGCCTCAACTTTGGCCGTGTCTTTACTTTCAATGAAA
TCAAGAAAACAACAAAAAACTTTGATGAAAAAGCAGTCATTGGTGTTGGAGGCTTTGGAAAAGTGTATCTTGGTGTATCGGAAGATGGAACAAAACTAGC
TATAAAGCGAGGAAATCCATCATCCTCACAGGGCATCAACGAATTCCTGACAGAAATTGAGTTGCTATCCAAGCTTAGGCATCGACATCTTGTTTCACTC
ATTGGTTATTGTGATGAACAATCAGAAATGATTCTAGTCTATGAGTACATGTCTAATGGTCCTTTGCGTGACCATATTTATGGTTCCAGTTTGCCAACTC
TGACATGGAAACAAAGGCTTGAAATCTGCATAGGAGCTGCTCGAGGACTGCACTACCTTCACACTGGTTCAACTCAGGGAATAATACATCGCGATATAAA
AACTACAAACATCCTCCTTGATGAGGACTTTGTGGCAAAGATGGCTGAATTTGGCTTGTCAAAAACCGGTCCTTCCCTGGAGCAAACACATGTTTACCCA
ACAGTGGAAGGGTAATTTTGGGTACCTTGATCCAAAATACTTAAAAAAACAAAAA
>LE_HBa0120P13_SP6_87912 (trimmed for quality and cloning vector)
GGCTGTTCTCCTCTGGTGGACGGCATGGTGTAATGCCAAGATCACGCGGAATGAGAATTGCTGCAGCTTTTGGATTGGCAATGGGGATTACAGCATTAGT
ATTGCTTTTGATGGGCATTGTTCGTTGGCGAAGGAAGCCAACAAAGGGTTGGGAGAAGCAGAAGACATTCTCTTCATGGCTTCCTCTCAATGCTAGTTAC
TGCAGCTTCATGTCAAGCAAGAGCAAGACTAGTTGTTCAACAATCATATCCTCTGGCCTCAACTTTGGCCGTGTCTTTACTTTCAATGAAATCAAGAAAA
CAACAAAAAACTTTGATGAAAAAGCAGTCATTGGTGTTGGAGGCTTTGGAAAAGTGTATCTTGGTGTATCGGAAGATGGAACAAAACTAGCTATAAAGCG
AGGAAATCCATCATCCTCACAGGGCATCAACGAATTCCTGACAGAAATTGAGTTGCTATCCAAGCTTAGGCATCGACATCTTGTTTCACTCATTGGTTAT
TGTGATGAACAATCAGAAATGATTCTAGTCTATGAGTACATGTCTAATGGTCCTTTGCGTGACCATATTTATGGTTCCAGTTTGCCAACTCTGACATGGA
AACAAAGGCTTGAAATCTGCATAGGAGCTGCTCGAGGACTGCACTACCTTCACACTGGTTCAACTCAGGGAATAATACATCGCGATATAAAAACTACAAA
CATCCTCCTTGATGAGGACTTTGTGGC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.969805
Expected error %
0.048407
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g39110.1 Score 274 E Value 4e-74 Identity 19.00% Align. Length 716bp (98.49%) Frame 1
68417.m05538 protein kinase family protein contains protein kinase domain, Pfam:PF00069
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g61350.1 Score 273 E Value 5e-74 Identity 21.10% Align. Length 662bp (91.06%) Frame 1
68418.m07698 protein kinase family protein contains protein kinase domain, Pfam:PF00069
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_910356.1| Score 285 E Value 1e-75 Identity 20.50% Align. Length 683bp (93.95%) Frame 1
Similar to putative receptor-like protein kinase (AL035679) [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_550569.1| Score 285 E Value 1e-75 Identity 20.50% Align. Length 683bp (93.95%) Frame 1
putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] dbj|BAC24825.1| putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] dbj|BAD67738.1| putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0120P13
Clone
Clone name
hba-120p13
LE_HBa0120P13
P120P13
Clone type
BAC
Contamination
none
Estimated length
136,259
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found