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Clone Read LE_HBa0040K03_T7_8549

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0040K03_T7_8549
Primer
T7
ID from Seq. Facility
LE_HBa_040_K03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
753 trimmed for vector and quality, 944 raw
Genbank Accession
DU027744
Sequence
>LE_HBa0040K03_T7_8549 (raw untrimmed)
CTTAAACTCGGTCCCGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGGTGGAAATACGCAAGAATTAACTGGCATTGATACTAAGCCTCCCT
TCAACTTAAGCTTGACAACGTGACTCAACTTAGATAAACCAGAAACCAAAAATATTCTCCTTCTACCCTCTACTTCCAAACACAAGGATTGAAGGCTCTT
AAGCTCTGCAAGTGAATTACATAATTGATTCATGTCTAGGTTATCAGCACTTCCAATGAGTAAACCAACTTTTTGGAGATGAGTCATTCTAGTCAGGTTT
TGATGGTGCATCCAGTGATGAACAGGTATGCTGCCTAGAGTTTGGAGATTGTTAGGTAGGTCAATCTTCAATAGGCTGGGGGAATTTATGTAACCAAGTA
TATGCCGTAAATTCTCTAACTTCCATAAGACATTAGGAACTTTCACAGAATAAAACCTAGACATGGGCATATCTATCGTTTCCAAGTTTTGCAGACGACT
TATTGAATGGGGAAACTTCTTAATACATGTCTTCCATCCTATGCCTAAGTACTTCAAGGAACATAGTTTCCCAATACTATCTGAGATCACCTTTAAACCA
GGAGAGTCTATGTATAGCACTCTGAGAAGTTTGAAACTACCCGTACAAATACAATCAAGGTTAACTAGTTTAGAAGATGAATCAAAGGATAGAAGAGACC
TTATATACGATTTTGAATTTCCAAAATATTCGTACCTCTTTACTGGAGAGTAAAGGACACGGTGCCGAAATGCAGAGAGGGATATAGATGGGATATCTAC
CTCCAGAAACATTTCTTTCCTGGCCTTCCATATACAAAAGTCTCGTAGGAAATCATGGAGGCCGCAACCTCTAACTCTGTCTTTGGCTTTACAAAGGAAT
ACTTAAGCTAATTTCTGCCATTAGCTCATAAGGAAATCCCCCCA
>LE_HBa0040K03_T7_8549 (trimmed for quality and cloning vector)
AGCTTAGGTGGAAATACGCAAGAATTAACTGGCATTGATACTAAGCCTCCCTTCAACTTAAGCTTGACAACGTGACTCAACTTAGATAAACCAGAAACCA
AAAATATTCTCCTTCTACCCTCTACTTCCAAACACAAGGATTGAAGGCTCTTAAGCTCTGCAAGTGAATTACATAATTGATTCATGTCTAGGTTATCAGC
ACTTCCAATGAGTAAACCAACTTTTTGGAGATGAGTCATTCTAGTCAGGTTTTGATGGTGCATCCAGTGATGAACAGGTATGCTGCCTAGAGTTTGGAGA
TTGTTAGGTAGGTCAATCTTCAATAGGCTGGGGGAATTTATGTAACCAAGTATATGCCGTAAATTCTCTAACTTCCATAAGACATTAGGAACTTTCACAG
AATAAAACCTAGACATGGGCATATCTATCGTTTCCAAGTTTTGCAGACGACTTATTGAATGGGGAAACTTCTTAATACATGTCTTCCATCCTATGCCTAA
GTACTTCAAGGAACATAGTTTCCCAATACTATCTGAGATCACCTTTAAACCAGGAGAGTCTATGTATAGCACTCTGAGAAGTTTGAAACTACCCGTACAA
ATACAATCAAGGTTAACTAGTTTAGAAGATGAATCAAAGGATAGAAGAGACCTTATATACGATTTTGAATTTCCAAAATATTCGTACCTCTTTACTGGAG
AGTAAAGGACACGGTGCCGAAATGCAGAGAGGGATATAGATGGGATATCTACC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.962296
Expected error %
0.669229
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_476922.1| Score 74 E Value 4e-12 Identity 10.80% Align. Length 554bp (73.57%) Frame 1
putative disease resistance protein RPR1 [Oryza sativa (japonica cultivar-group)] dbj|BAC79938.1| putative disease resistance protein RPR1 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0040K03
Clone
Clone name
hba-40k3
LE_HBa0040K03
P040K03
Clone type
BAC
Contamination
none
Estimated length
96,883
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found