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Clone Read LE_HBa0040K03_SP6_8548

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0040K03_SP6_8548
Primer
SP6
ID from Seq. Facility
LE_HBa_040_K03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
723 trimmed for vector and quality, 847 raw
Genbank Accession
DU027743
Sequence
>LE_HBa0040K03_SP6_8548 (raw untrimmed)
AAATTGGTTTTCGTCCCCTAGTGAGNTCCNCNNCNNNNGNNNANNTCNNGCAAATGATCCACCAATAAATGAGATCGCGTCTTCCCTCTCTTGTAAATAA
ATTTCAAGGTAAAATATGATGGATGACTGTAGGCTTATTAAAGCCTTTATTGAGTTTTCCTCAGTTTCACTTCTGTATATTTGTGTTGTTCATAAGTGTA
CTCATTTGCTGTAGTTAATCTTTAGTGACAGACTACATTAGCACTTTGGTTTGCAATCAACTGCTTGCTCACTAGTTCTATTACATGTCACTAGAGGACT
TCGTAAAGATCTAGCTTTTTGCTCCTTAGTTGTGATTAATATGAAGTATTGTTGAATATGTTGTTCAATTTCATGATGCATGTCAACTTCAACATAATCT
GACGGGACAGTATCATTATATCTTAAAGCAGGAATACTCGAGCGATCATCATTTATGGCTTGAAATACGGAAAAATTATTTAAATAGTAAATGCATTTTA
AGTTATGAACTAGTTCCATTAGCCACCATGGGAAACTTGGTGGTGGTTCACATTAAGAGTGATGATATTCCAGCTTCTTCTACATCAAATTTAATCTTTT
ACCAAATGAGAAGGCATACAGTCCATCTTACTTAGCTTTGAAAGAGAAGACAGAACTTGTTCCATGTCAGGTCTATCTTCAGGATCAGGAGAGGTGCAGG
ACAAAGCCAAGTTAAGAAGTCCCTCTACTACATCCTGTTTCTTGGAGACATATGAAGCTAGATTAGGATCCACAATCTGAAACAGCTTGTTTATGCCATT
CGCAAGGGCATTCTGAACAATTTGAATGCAAAGTAATTTGGTAATTC
>LE_HBa0040K03_SP6_8548 (trimmed for quality and cloning vector)
AAATGATCCACCAATAAATGAGATCGCGTCTTCCCTCTCTTGTAAATAAATTTCAAGGTAAAATATGATGGATGACTGTAGGCTTATTAAAGCCTTTATT
GAGTTTTCCTCAGTTTCACTTCTGTATATTTGTGTTGTTCATAAGTGTACTCATTTGCTGTAGTTAATCTTTAGTGACAGACTACATTAGCACTTTGGTT
TGCAATCAACTGCTTGCTCACTAGTTCTATTACATGTCACTAGAGGACTTCGTAAAGATCTAGCTTTTTGCTCCTTAGTTGTGATTAATATGAAGTATTG
TTGAATATGTTGTTCAATTTCATGATGCATGTCAACTTCAACATAATCTGACGGGACAGTATCATTATATCTTAAAGCAGGAATACTCGAGCGATCATCA
TTTATGGCTTGAAATACGGAAAAATTATTTAAATAGTAAATGCATTTTAAGTTATGAACTAGTTCCATTAGCCACCATGGGAAACTTGGTGGTGGTTCAC
ATTAAGAGTGATGATATTCCAGCTTCTTCTACATCAAATTTAATCTTTTACCAAATGAGAAGGCATACAGTCCATCTTACTTAGCTTTGAAAGAGAAGAC
AGAACTTGTTCCATGTCAGGTCTATCTTCAGGATCAGGAGAGGTGCAGGACAAAGCCAAGTTAAGAAGTCCCTCTACTACATCCTGTTTCTTGGAGACAT
ATGAAGCTAGATTAGGATCCACA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960827
Expected error %
0.155843
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0040K03
Clone
Clone name
hba-40k3
LE_HBa0040K03
P040K03
Clone type
BAC
Contamination
none
Estimated length
96,883
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found