Clone Read LE_HBa0069B03_SP6_83380

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0069B03_SP6_83380
Primer
SP6
ID from Seq. Facility
LE_HBa_069_B03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 807 raw
Sequence
>LE_HBa0069B03_SP6_83380 (raw untrimmed)
CGGCCTCCTTTTCGAGTAAAAAAGGGGGCCCCCTCTTTTTTTTTNNTNTTNNNTTNTTCTTTCTTTTAAGGGGNCNNNNNNANAANNNAAAAAAAAAAAA
NNAANNNAAAAAAAAAAAAAAAGAAAAAAAAAAAAANAAANNAAAAAAAAAANANNAAAAAAAAAAANAAAAAAAAAAAAAANAAANANNNANNAAANNN
AAAAAGAAAAAGAGNNAANAANNAAANNAAANAAAANAAAAANAAAAAAANANAAAAAAAAAAAAANNAAAAANAAAAAAAAAAANNAAGGGAAAAAAAA
AAANAAANGGANANAAAANANANNAAAAAAAAAAANAAAAANAAAAAAAAANANNAAANAANAAAAAAAAANAAAAAAAAAAANNNAAAAAAAAAAAAAA
AAANNAAAAAAAAAAAAAAAAAAAANAAAAAANNAAAAAANAAAAAAAAAAAAAAANAAAAAANNANAANAAAAAAAAAANAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAANANAAAAAAANANAAAAAAAAAAAAAAAANNANNNAAAANAANAAAAAAAAAAANNAANAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAANAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAANAANAAAAAAAAAAAAAAAAAAAANNNAAAAANNNNAAAAAAAAAAAAAAAAAAA
AAAAAAN
>LE_HBa0069B03_SP6_83380 (trimmed for quality and cloning vector)
AAAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
12.9056
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0069B03
Clone
Clone name
hba-69b3
LE_HBa0069B03
P069B03
Clone type
BAC
Contamination
none
Estimated length
133,366
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found