Clone Read LE_HBa0055G18_T7_82115

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0055G18_T7_82115
Primer
T7
ID from Seq. Facility
LE_HBa_055_G18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
867 trimmed for vector and quality, 940 raw
Sequence
>LE_HBa0055G18_T7_82115 (raw untrimmed)
TTTAACCTGGTCCCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTACTTCTCGTGGATAAGTTATCGTTTTATCCCCCAGAGGTCCCTTAA
CTTTCAAATCTTGGCCCTTTATTGTGAGTGTCACATTTGAAGGTACTGATATTGGTTGCTTCCCGATTCTTGATAGTTTACATTCGACCGTCTTACTCAC
AAAACCAACACGGCGAACAGCAACACTCGATACATGAAACCCATTCAAACTCCCAACAAAAGGAGACCGCAAAGTGCTGACATGAAATAAAACAAGAATA
ACAGATATGTTTTACAAGAAAGCCAACACCAATAACAGCCACACTCAAGATATGAATCCCATTCAAACCTCTCAACAAATGGAGACCTTAAATAGATAAA
ACAAGATCAAAGTTTTTATTTTTACAAGAAAACATGCTAAGCCCCGACACCCTCTATACTGGCTAAAGCTTTATTCTTCAAATAAGGATACCCCAGAATC
TGAAAGACACAAAATTGCATAAATTTGACACAAACTGACCAATAAACTACAAATGTGCAAAATACCCAATTTCAACAATTCAAGAATCAAAATGAAAAAG
TAAAACTCAACAAGCTAAATGCACCTAATATGTATAGAAACAGTGAGTGAGAAGGGTAGCAGAATAATTAAGTTCTTACCCAGAACACACAAAAGCTACA
AACTTTATTGTATAATAAGGAAACCCACAAGCTCAAAGACACAAAATTGCATAAATTGAGCAAGAAACTATAAATGCACAATACCATTTCAACAATTCAA
GAATCAACATGAAAGTGTAAAAATCCACCAGCTAATATTGCACCTAATATGTGAAGGGGAGCAAAACAATTAAGTTCCTTACCCTCAATACCCAAAACCT
CAAACTTTTTTTGTAATATGAGGAGACCCTGAAACTAAAA
>LE_HBa0055G18_T7_82115 (trimmed for quality and cloning vector)
AGCTTTACTTCTCGTGGATAAGTTATCGTTTTATCCCCCAGAGGTCCCTTAACTTTCAAATCTTGGCCCTTTATTGTGAGTGTCACATTTGAAGGTACTG
ATATTGGTTGCTTCCCGATTCTTGATAGTTTACATTCGACCGTCTTACTCACAAAACCAACACGGCGAACAGCAACACTCGATACATGAAACCCATTCAA
ACTCCCAACAAAAGGAGACCGCAAAGTGCTGACATGAAATAAAACAAGAATAACAGATATGTTTTACAAGAAAGCCAACACCAATAACAGCCACACTCAA
GATATGAATCCCATTCAAACCTCTCAACAAATGGAGACCTTAAATAGATAAAACAAGATCAAAGTTTTTATTTTTACAAGAAAACATGCTAAGCCCCGAC
ACCCTCTATACTGGCTAAAGCTTTATTCTTCAAATAAGGATACCCCAGAATCTGAAAGACACAAAATTGCATAAATTTGACACAAACTGACCAATAAACT
ACAAATGTGCAAAATACCCAATTTCAACAATTCAAGAATCAAAATGAAAAAGTAAAACTCAACAAGCTAAATGCACCTAATATGTATAGAAACAGTGAGT
GAGAAGGGTAGCAGAATAATTAAGTTCTTACCCAGAACACACAAAAGCTACAAACTTTATTGTATAATAAGGAAACCCACAAGCTCAAAGACACAAAATT
GCATAAATTGAGCAAGAAACTATAAATGCACAATACCATTTCAACAATTCAAGAATCAACATGAAAGTGTAAAAATCCACCAGCTAATATTGCACCTAAT
ATGTGAAGGGGAGCAAAACAATTAAGTTCCTTACCCTCAATACCCAAAACCTCAAACTTTTTTTGTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.939602
Expected error %
1.69492
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g05190.1 Score 101 E Value 6e-22 Identity 21.90% Align. Length 218bp (25.14%) Frame 1
68414.m00523 ribosomal protein L6 family protein Similar to Mycobacterium RlpF (gb|Z84395). ESTs gb|T75785,gb|R30580,gb|T04698 come from this gene
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM62933.1| Score 101 E Value 3e-20 Identity 21.90% Align. Length 218bp (25.14%) Frame 1
putative chloroplast 50S ribosomal protein L6 [Arabidopsis thaliana] gb|AAK64135.1| putative chloroplast 50S ribosomal protein L6 [Arabidopsis thaliana] gb|AAK25975.1| putative chloroplast 50S ribosomal protein L6 [Arabidopsis thaliana] ref|NP_172011.1| ribosomal protein L6 family protein [Arabidopsis thaliana] gb|AAB71459.1| Similar to Mycobacterium RlpF (gb|Z84395). ESTs gb|T75785,gb|R30580,gb|T04698 come from this gene. [Arabidopsis thaliana] pir||C86186 hypothetical protein [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_469777.1| Score 90 E Value 7e-17 Identity 17.60% Align. Length 254bp (29.30%) Frame 1
putative ribosomal protein L6 [Oryza sativa (japonica cultivar-group)] gb|AAO32311.1| putative chloroplast 50S ribosomal protein L6 [Oryza sativa (japonica cultivar-group)] gb|AAR87250.1| putative ribosomal protein L6 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0055G18
Clone
Clone name
hba-55g18
LE_HBa0055G18
C12HBa0055G18
P055G18
Clone type
BAC
Contamination
none
Estimated length
82,593
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found