Clone Read LE_HBa0055G18_SP6_82114

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0055G18_SP6_82114
Primer
SP6
ID from Seq. Facility
LE_HBa_055_G18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1271 raw
Sequence
>LE_HBa0055G18_SP6_82114 (raw untrimmed)
CCTCTTCTCTTTCACTGCTTGTACTTATCTCTTTTCTTAGTCTCTCTTTATAATTACCACCCACAATACGAAATCAGCAAATCATGTAACAAAAGAAAAC
AACCCCTTTCTCCCTTTATACAAACACATAGCCCACTTAANAACAGCAACACCATGAGAATACCCCCTCTCTTCCTCTTTTTGCTCTCTCTNCTTTTTTT
AAATAAATAATATTATAAAAATGATATTTCATTTTTTTAATAGAGCCCCCTAACACCCCTCTCCCCTCATTCTTTCCTATTTTACTTATCTATTATTTTA
CCTCTCCACCTGTAAACTCTTATCTAGATGTCCTTTTATTATATTCTACAACCTCTTTCCCAACTCTATCATACCCACACATCAACCTTCAACATTCACT
CATAAATCTATATCCTCTTCTTTGCTTACTAATTCTGATGTATATCTACTCTACCTACATCATCCTTACACATATTTATATACTCATCTCTAACAAATTC
TTATTTGTACAGAACAATATATTACCACAGAATCATTTATAACATCATATCGTTATTCATGATGTCTTTCTTATGCACACACCATATACAATAACTCATA
ATCTACATGTTATATCACAGAAAACAGAAACCACACTCTTCTTCTTTACTGTTATATCAGAATCTACATTATACTATATAACAAGATTTAAATTTTATTT
ATGCCTTTTAGTGCACACCCTCTCACTCTCTCATCTCCTTGTTCTACACTCTTGAGAATAACAATATATGGTGTCAGACAGCTCAGAAATCTTTCACTCT
ACCACATCTTTATATACGCAATGTCACTTACGCCAAACTTAATTTGATATATGTTCTAGTTATTGATGCAAGTACCGTGATCCATAGTACATTGTGACAT
TACTATTCTATCCTTCTACTTTAATCCTTACTCCATAATATTCCTCAGCTCCACACGCCAAACACATATCATCGATACATAAACACATAGTCACTATCTG
CAGATTCGTCACTCTTCTAATACTCTTCTCTTCTTTCTCGCGTCGCTCCTCTCATATCATGTATCTAGTTTCTTGCTNTGCATCGATTCACATTCTTTTT
TTAATAACTAATCCCTATAACCACGCAATCTCACGTCTTCTTCAGGCATTCTCTTCCNATATTTGGCACTGCTTTATTCATTCTATTATCTTTTTGTCAA
CTAATTTTACCAATTCATTAAACCACGTTATTTATCTTCTCGACGCACCACAATCGACTTCTTCCTCTTCT
>LE_HBa0055G18_SP6_82114 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.649368
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0055G18
Clone
Clone name
hba-55g18
LE_HBa0055G18
C12HBa0055G18
P055G18
Clone type
BAC
Contamination
none
Estimated length
82,593
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found