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Clone Read LE_HBa0052G16_T7_81343

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052G16_T7_81343
Primer
T7
ID from Seq. Facility
LE_HBa_052_G16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
686 trimmed for vector and quality, 921 raw
Sequence
>LE_HBa0052G16_T7_81343 (raw untrimmed)
CCATGGCCTTCGTATAGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTATTATAACTAACAACATTGTGGACAATAGTATTTATTGGACCATT
CAGAAATCTAAGTTTCAAACTTGAAACAATATACTAAAAGATACAAAGTATGAGAAAGTGTAATAAATATTTTAGAATGTTAGAAAGTATTTGTATCATA
GGGAATGTCTATCATGTGGAATCTTTTTAGGATATGGTTAAGAGTCCTACTTGGGGACTAAGTTAGATTTTCCCTATAAATAGACATGTTCTCTTCAATG
TAAAATCATCCCTCAAGAGAAATAATAAGTCTTTTCTTCTCTCAATTTTCTTCTTTTTATTCTATAGTTTCATAACACGTTATCAGCACGAGACTCTACT
TTCTCAAAAAGTGAAGGTTAGATTTGAAGAATTAATAAGGTATTATTTATTTTTTTGTTTTTTAATATTAATGATTAATCTTACGAAATTACAGTTCACT
GTCCTTCAAAGTTCGGGTAGTAACTGCCTCTCATGGGTGTTGGATGTTAAAATCCACCTTGATGCAACGGGTCTTGTAAAAACCCTAAAAGAAGAAAATA
AGGCATCAAAGCAAAACTATGCACGAGAAATGATATTCTTGCGTCATCATCTTGACAAGATTCTGAAAATCGAATATCTGACAGTTTTGGATCCACTTGT
TTTGTGAAAAAAGCCTAAAAGAAAGATACGACCACTTAAAATGATCATACATCCCATGGGACAATATTATTGGATGCTTCTAAGGCTACAAGACTTTAAG
TCATTACATGAGTATAATTTTGTTCTGTTTAGACTCCCTTTCTCGTTTGAAATTTTTGGAAAAACCGGTTGTGAGATTGAATTATGGAAAAAAATTCCTT
TCTTTTCTTGTCCCAAAATTC
>LE_HBa0052G16_T7_81343 (trimmed for quality and cloning vector)
CTAGAGTCGACCTGCAGGCATGCAAGCTTTATTATAACTAACAACATTGTGGACAATAGTATTTATTGGACCATTCAGAAATCTAAGTTTCAAACTTGAA
ACAATATACTAAAAGATACAAAGTATGAGAAAGTGTAATAAATATTTTAGAATGTTAGAAAGTATTTGTATCATAGGGAATGTCTATCATGTGGAATCTT
TTTAGGATATGGTTAAGAGTCCTACTTGGGGACTAAGTTAGATTTTCCCTATAAATAGACATGTTCTCTTCAATGTAAAATCATCCCTCAAGAGAAATAA
TAAGTCTTTTCTTCTCTCAATTTTCTTCTTTTTATTCTATAGTTTCATAACACGTTATCAGCACGAGACTCTACTTTCTCAAAAAGTGAAGGTTAGATTT
GAAGAATTAATAAGGTATTATTTATTTTTTTGTTTTTTAATATTAATGATTAATCTTACGAAATTACAGTTCACTGTCCTTCAAAGTTCGGGTAGTAACT
GCCTCTCATGGGTGTTGGATGTTAAAATCCACCTTGATGCAACGGGTCTTGTAAAAACCCTAAAAGAAGAAAATAAGGCATCAAAGCAAAACTATGCACG
AGAAATGATATTCTTGCGTCATCATCTTGACAAGATTCTGAAAATCGAATATCTGACAGTTTTGGATCCACTTGTTTTGTGAAAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.936534
Expected error %
0.220339
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g04135.1 Score 78 E Value 5e-15 Identity 15.40% Align. Length 233bp (33.97%) Frame 3
68415.m00397 hypothetical protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g33303.1 Score 73 E Value 1e-13 Identity 16.00% Align. Length 212bp (30.90%) Frame 3
68418.m03951 hypothetical protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK84482.1| Score 96 E Value 1e-18 Identity 20.90% Align. Length 233bp (33.97%) Frame 3
unknown [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_671773.1| Score 78 E Value 2e-13 Identity 15.40% Align. Length 233bp (33.97%) Frame 3
hypothetical protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052G16
Clone
Clone name
hba-52g16
LE_HBa0052G16
P052G16
Clone type
BAC
Contamination
none
Estimated length
87,739
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found