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Clone Read LE_HBa0016N06_T7_79355

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016N06_T7_79355
Primer
T7
ID from Seq. Facility
LE_HBa_016_N06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
797 trimmed for vector and quality, 862 raw
Genbank Accession
DU062282
Sequence
>LE_HBa0016N06_T7_79355 (raw untrimmed)
TTAAACCTCGGTCCGGGGGTATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAGCTTTACTTTCTCAACCTTTCTTTAAACTTTCTTAGATCACGCAC
ATGGTCAATCTGCATTCTTGACTTAATGATGACATCATCGACATATACCTCAACTTCATTATGCATCATGTCATGGAATATTGTAGTCATAGCTCTTATG
TAGGTTGCCCCTGCATTTTTTTGACCAAATGGCATGACCCTATATAATATGTACCCCACAGGGTAGTGAAAGAAGTTTTTTCTGCGTCTTTTTCATCCAT
GAGAATCTGGGGATATCCGGCGTAGAAGTCCATGAAAGATTGAATCTCGTATTTAGCACAATATTCAACCAAGATATGAATGTTGGGTAGTGGAAAATTG
TCTTTTGGACTTTCTTTGTTTAAATCTTGATAATCAACACAAACTCTGATCTTTCCATACTTTTTGGTACTGGAACAACATTCGCCAACCAAGTAGTGCA
TTGGACGACCCTAATCAGTTTTGCATTCAGTTGCTTCATGATTTCCTCCTTGATTTTATCGCTCATATCTGTCTTAAATTTTCTTTGATTTTACTGGACA
TGTGGAAAACCGGGACGTATGGGAAGTTTATAAACAACCAAATCAGCAGTTAACCCCGGCACGTTATCGTATGACCAAGCGAACACATCTTTGTATTTAA
TTAAAAATTGAATTAAGTCATCTCGAATATTTCGATCGACATGAATCCTTATCTTTATTTATTTCACTTCTTCGGGAGTTCCCAATTTAACACCTCTGTT
TCACTTAAATAAGTTTAGGCTTATTTCAAATTGATCCAAACCCCTTTAATTTCTTCTTCACT
>LE_HBa0016N06_T7_79355 (trimmed for quality and cloning vector)
AGCTTGAGCTTTACTTTCTCAACCTTTCTTTAAACTTTCTTAGATCACGCACATGGTCAATCTGCATTCTTGACTTAATGATGACATCATCGACATATAC
CTCAACTTCATTATGCATCATGTCATGGAATATTGTAGTCATAGCTCTTATGTAGGTTGCCCCTGCATTTTTTTGACCAAATGGCATGACCCTATATAAT
ATGTACCCCACAGGGTAGTGAAAGAAGTTTTTTCTGCGTCTTTTTCATCCATGAGAATCTGGGGATATCCGGCGTAGAAGTCCATGAAAGATTGAATCTC
GTATTTAGCACAATATTCAACCAAGATATGAATGTTGGGTAGTGGAAAATTGTCTTTTGGACTTTCTTTGTTTAAATCTTGATAATCAACACAAACTCTG
ATCTTTCCATACTTTTTGGTACTGGAACAACATTCGCCAACCAAGTAGTGCATTGGACGACCCTAATCAGTTTTGCATTCAGTTGCTTCATGATTTCCTC
CTTGATTTTATCGCTCATATCTGTCTTAAATTTTCTTTGATTTTACTGGACATGTGGAAAACCGGGACGTATGGGAAGTTTATAAACAACCAAATCAGCA
GTTAACCCCGGCACGTTATCGTATGACCAAGCGAACACATCTTTGTATTTAATTAAAAATTGAATTAAGTCATCTCGAATATTTCGATCGACATGAATCC
TTATCTTTATTTATTTCACTTCTTCGGGAGTTCCCAATTTAACACCTCTGTTTCACTTAAATAAGTTTAGGCTTATTTCAAATTGATCCAAACCCCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.953832
Expected error %
0.928796
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 117 E Value 8e-53 Identity 65.50% Align. Length 660bp (82.81%) Frame 3
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 111 E Value 2e-49 Identity 66.70% Align. Length 642bp (80.55%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016N06
Clone
Clone name
hba-16n6
LE_HBa0016N06
P016N06
Clone type
BAC
Contamination
none
Estimated length
127,431
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found