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Clone Read LE_HBa0016M24_SP6_79342

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016M24_SP6_79342
Primer
SP6
ID from Seq. Facility
LE_HBa_016_M24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
456 trimmed for vector and quality, 834 raw
Genbank Accession
DU062275
Sequence
>LE_HBa0016M24_SP6_79342 (raw untrimmed)
CCAAAAATGGTGTGATCAACTTAAGGGGAGATTGGATGACCACTTACCTCTCGTTGAGTTCGCTCACAACAATAGTTATCATTCGAGCATCCAAATGGCT
CCATATGAAGCTCTTTATGGTAGAATATTCAAATCTGCTATTGGGTGGTTTTAAGTTGGTGAAGTAGGGTTGATAGGAATAGATCTTGTTCACCAAGCTA
TATTGAAGGTGAAAGTGAATCAATAGATATTGAAGGCAACACAAAGTTGCCAAAAGTCCTACACAAATGTTAGGAGGAGATCGTTAGAGTTTGAGGTAGA
TGATTGGGTTTATCTAAAGATTTCACCCATGAAATAAGTTATAAGGTTTGGTAAAAAGGGAAAGCATAGTCCCCCATAGATATATTGGACCATATAGAAT
CTCCAAGAGAATGATCAATGTAGCTTATGATTGGAGCTACACCAAGAGTTAGAAGCGGTTAATCCAGTATTCCATATTTCTATGTTGAAGAAACGTTAGG
GTGACCCTTCATTAATATTACCATCTGATAATGTTGGGATTAAGGATAACCTACCGTATGAATAAATTTCGGTTCATATTTTGGGATCATTAAGCTTCGT
TTTTTGACTACCAAAGAACTTCCTTCAGCTCAATTTCTTCTTGTAGGAACCTCATCTTATTAGAAGCCATCTATGTTATTTGATTGATTCTTTTAACTCT
ATTACTTTCTCTTTTTCTTATTCTTTGTGTTACTCGCTCATAAAAGTAATGATATATAAATGTGATCTGTTTTTGCTGTTGTCTATAATGTCTTTTCCTT
TGATCTCTTTTTTTTTTATACGAATTATTTTACT
>LE_HBa0016M24_SP6_79342 (trimmed for quality and cloning vector)
TGGATGACCACTTACCTCTCGTTGAGTTCGCTCACAACAATAGTTATCATTCGAGCATCCAAATGGCTCCATATGAAGCTCTTTATGGTAGAATATTCAA
ATCTGCTATTGGGTGGTTTTAAGTTGGTGAAGTAGGGTTGATAGGAATAGATCTTGTTCACCAAGCTATATTGAAGGTGAAAGTGAATCAATAGATATTG
AAGGCAACACAAAGTTGCCAAAAGTCCTACACAAATGTTAGGAGGAGATCGTTAGAGTTTGAGGTAGATGATTGGGTTTATCTAAAGATTTCACCCATGA
AATAAGTTATAAGGTTTGGTAAAAAGGGAAAGCATAGTCCCCCATAGATATATTGGACCATATAGAATCTCCAAGAGAATGATCAATGTAGCTTATGATT
GGAGCTACACCAAGAGTTAGAAGCGGTTAATCCAGTATTCCATATTTCTATGTTGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957924
Expected error %
0.210264
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 194 E Value 5e-49 Identity 23.80% Align. Length 452bp (99.12%) Frame 1
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 188 E Value 3e-47 Identity 23.00% Align. Length 452bp (99.12%) Frame 1
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016M24
Clone
Clone name
hba-16m24
LE_HBa0016M24
P016M24
Clone type
BAC
Contamination
none
Estimated length
58,188
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found