Clone Read LE_HBa0016A20_T7_78759

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016A20_T7_78759
Primer
T7
ID from Seq. Facility
LE_HBa_016_A20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1505 raw
Sequence
>LE_HBa0016A20_T7_78759 (raw untrimmed)
NGGTACACAGACAGAGTGCNCAGACAGGCTATGCGTTTGAGGTCATGAGAGAGATGAGGCTGGCACTGCAGATCGTGTGTTACTGNTACTTACTCTGCTA
TGTCNGTCTCTATATGTATATAGGAGNGAGGAGAGATANTCTCGTCGCAGNTCGATCAGTGATNGCACACGNCGCTAGNTAGACTGCTCAGCAGTAGACA
TAGATNCNATAGCACTCGTACAGCACACGGCTCGTAAGAGGTGGGTNTGGCGTATAGAGTATNTGTGCAGNCGTGATGTTCTCACGTCANCACAGACTGA
GAGGTGATAGCTCGAGNTATGANTATGACTAGCGTGCAGTCTCGCGGGCTACACGNTNTGAGACTGCTGACAGATAGTGAGTGATTGATAATAATCTGCT
ACACACAGCGTGCGACGATNTGATGCTAGTNTCGATGTAGTTATGATGCGCTGTCGCAATANCTGGATGTACACGATACAGTNCATTNATTNGTNATNCA
AGCTNTNANATNGTCGTATACNGNCGATATGCTCGCGGTANCTANAGCGCATNACNGCATCATGTGTACTCATACTGTNTATGANCAACAATNCTATAGT
TNCGTCCGTCTCTAGAACTAACTATATGNTGNGACGAGCACGCAGCTNCATATCACACACACAGTGTACAGTCACACAGACTNGTAACNCACACTAGATC
AANCGTNATGATGCACGACCATAGTCGGCCTAGTATAATCTCACTGATGTGACAGGNGTATGTTTATTNGATNGTGCTCACATGTGCAGAAGCTCTGAGG
TCGTCCCATAGAGACATTAGTNATGAGCACTACATAGACGAGANTGACATNATCTGATATGAGTAGACGAGAGATAGAATGNATCGACGCGATCCAGTAG
NCTACATCCATNCGACACTGTCCAAGCATGTATAGAGCATCGCATCTCGTGCNANGAACTAGCNNGCCTGATNGATTGCTATNACTATTGATGTCGATGT
CNGATGTCGTCATGTGACGGAGTGANANGACANCGTAGGTTCTGTGTGGACACTCGACTCGTGTATACTAGCTACACACAGCGTTACTCGTGCACTTNAT
GCTNATCGTATGACGTGTAACNCCCGTACTNCGNTACATGTCACNGTGCTNGNCACTGTGTCGTGTGTGCACGCGTCANATATATGTACATAATAGTACG
CGTACATGCTGGATCGAACTATACACAGTTACATGTCGCTTGATCGCTATACGTGATGCATGGTTGCTGANGTGNCTGCGCGCTATANAAGACACTANTA
TGCATTCGCTCTATATGTACTACTACTACTGGCTCTAATGATANCGNCGNATNTCATGTCGTNATATNCTGCCTGTGCNANCTTCACNCACNGATGTCAA
CCGTCTACGCACAATGTCNCACTATAATGTGTCACGTAACATTNGCGNTCACTAGCACGACNTACACACTCATGCATGCGATGTAACTTNANGACTNCTC
TACTC
>LE_HBa0016A20_T7_78759 (trimmed for quality and cloning vector)
TG

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
4.22223
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016A20
Clone
Clone name
hba-16a20
LE_HBa0016A20
P016A20
Clone type
BAC
Contamination
none
Estimated length
111,712
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found