Clone Read LE_HBa0016A20_SP6_78758

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016A20_SP6_78758
Primer
SP6
ID from Seq. Facility
LE_HBa_016_A20-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 976 raw
Sequence
>LE_HBa0016A20_SP6_78758 (raw untrimmed)
GTACGGTACCGTCGTCTCGCATCTGGGCGTCATAACGGATGTGTCCCGACTCGCTATCACCCTGCGTTTTGTTCTTGCTTTTGTCGACTGAGTATGGAGG
TCGCTTCCGATTCCACTTTCGATTGATGGCGAAAGATAGGTACTACTATACTCACCACGTCTCATCGGTGTCCTTTCTGCATACACATGTTCTTGAGGAT
CTAGGTTGCGAGAGTAGGCATCAGAGTCTGACATATGTAGTTGAGATTCTTAATTTTGACTTGCGTATATAGTACTACGGTGCTTATGGCCGATATATTG
ATGCGAGATAACTTGTAATATAATTAATCATAGCTAGTATGAATAATCACGTAATGATATCCTGCTCGCATACTTACATTTTACTATCATCTGCTTGACT
ATAGTAGCACAACTGGATGCTTGACTATAACNTGATACGAGCTTCGTCCGCGACACGGGCGAGGTTTCAACGCGCTCTGATCCGCACAGGACGGCGATCG
ACGGTGAGACACAGTGAGAGAACGGTGCAGAGCTTGTCTGTGCAGATAGAGATACAAGGCATGAAATCGCACATGGTTGATACGCAGATGTGATCATGAA
TGATGTAGACCGATAGTGCTATGTATCACTTCTGTAGAACCATGCTTGATCGCTGACGCGCCATGCTAAGCAGGGCCTCCGTTCGAGACTACGTATATGC
TACCACTGTCATTTCGAATAGTGCTTCTCTACTTCTACCTGGCTATCTACTCCACACGGCTGCAACGTCTTCTGTGTTCTCTCACGCTTTGTGGATTCCG
TCTCGCGCATATCTCGACACGCTGTNGCTACTAACCAGACTGAACACAGCACTCACGCTACCTC
GCTACCGCCTCTCATACAGACACCAGGTACGCGGGG
ACTACGCTCTGTACCTAAATTTCATGGATCTTCAGCTCATCTGTGACTGTACTTGATTCTCGTTGCCTTGATTCTA
>LE_HBa0016A20_SP6_78758 (trimmed for quality and cloning vector)
GC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.39716
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016A20
Clone
Clone name
hba-16a20
LE_HBa0016A20
P016A20
Clone type
BAC
Contamination
none
Estimated length
111,712
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found